Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E18
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.72 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.72 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   3.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.7  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   6.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 617 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYT 489
           R L+  +G  ++ +  I W+L   ++ V +M  FCI K   +T
Sbjct: 191 RTLQISDG--IENIGSIRWELAGTLAVVWIMCYFCIWKGVKWT 231


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 617 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYT 489
           R L+  +G  ++ +  I W+L   ++ V +M  FCI K   +T
Sbjct: 244 RTLQISDG--IENIGSIRWELAGTLAVVWIMCYFCIWKGVKWT 284


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 428 PNNEFRTESSAQLLEKLYQIGLIPTR 351
           P+N  RT  S+  LEKLY+   +  R
Sbjct: 19  PSNLLRTSFSSAKLEKLYRASSLQQR 44


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 662 HYITYILVLGVPKMVRKLK 606
           HY+  +  LG+P   R+L+
Sbjct: 293 HYVKIVYYLGIPSEARELQ 311


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 662 HYITYILVLGVPKMVRKLK 606
           HY+  +  LG+P   R+L+
Sbjct: 308 HYVKIVYYLGIPSEARELQ 326


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 512 IQKREDYTKYNKLSRDIRE 456
           +++ E+Y  Y KL R++R+
Sbjct: 392 VKQVEEYMAYRKLPREMRQ 410


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 512 IQKREDYTKYNKLSRDIRE 456
           +++ E+Y  Y KL R++R+
Sbjct: 360 VKQVEEYMAYRKLPREMRQ 378


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 309 ERTGRDISGQGKIPSCRYQSNLVKFF 386
           E TG D     +   C Y+ N  KFF
Sbjct: 116 EYTGDDCQKTYQYVQCHYKQNPEKFF 141


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 181 RNAGSFTTSGPTLTCPCSIN 240
           R   ++T   PTL CP + N
Sbjct: 205 RETPNYTACPPTLACPLNPN 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,627
Number of Sequences: 438
Number of extensions: 4050
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)