Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_E17
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 31 0.88
12_01_0169 - 1263679-1264349,1264437-1264641 30 1.5
02_05_0901 - 32618987-32619343 30 1.5
01_03_0241 - 14111286-14111935,14111992-14112115 29 2.7
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 29 3.5
04_01_0224 - 2830669-2830969,2831049-2831219,2831302-2832134,283... 29 3.5
07_03_1160 - 24430240-24431268 26 4.4
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 29 4.7
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 29 4.7
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 29 4.7
01_06_0218 - 27644712-27645017 29 4.7
03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501 28 6.2
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 28 6.2
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 28 8.2
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863... 28 8.2
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 31.1 bits (67), Expect = 0.88
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -3
Query: 502 RRSGRGRDADPDPAPVVNVLD-LGSDLVPESGKERAPEKERDRDPKNGPGHEIARDLGPG 326
RR D++ D V +V + GS V E R +KE K+G + R+ GP
Sbjct: 606 RRQSAHSDSEEDTTFVCDVKEGSGSRRVQEGAPRRQVKKEGSNKKKDGSTPQCVRNNGPK 665
Query: 325 TERSLNLEKGSG 290
R N G G
Sbjct: 666 VGRQTNGLNGQG 677
>12_01_0169 - 1263679-1264349,1264437-1264641
Length = 291
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = -3
Query: 484 RDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRDPKNGPGHEIARDLGPGTERSLNL 305
+DAD A V +L G+D R E + PK+G +AR L R++
Sbjct: 134 QDADAAAARAVFILSFGTDAYARV-LSRGSEADASA-PKHGR-RGLARLLADRVARAVEE 190
Query: 304 EKGSGLGRVIASGLAPTVAAPRVV 233
+G R G+AP APRV+
Sbjct: 191 LYEAGARRTAVMGVAPLGCAPRVM 214
>02_05_0901 - 32618987-32619343
Length = 118
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 499 RSGRGRDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRDP 371
R G ++ +P P P V D + + +RAP K+RD P
Sbjct: 76 RRGCAKEEEPQPEPEEEVETWSGDAIIVTRGKRAPRKKRDNAP 118
>01_03_0241 - 14111286-14111935,14111992-14112115
Length = 257
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 334 GPGTERSLNLEKGSGLGRVIASGLAPTVAAPRVVLT 227
G G R L + G+GLGR IA+ L + V+LT
Sbjct: 40 GGGGRRLLGEDDGAGLGRTIAASLVAEASGLTVLLT 75
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 188 RTPTLPPLPDKS--VPIIEKAPDINDENTS 105
+ P++PP+PDK V II K IN+ N++
Sbjct: 303 KLPSIPPIPDKDNLVQIISKINSINNGNSA 332
>04_01_0224 -
2830669-2830969,2831049-2831219,2831302-2832134,
2832216-2832677,2832756-2833489,2833578-2833707
Length = 876
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/102 (28%), Positives = 44/102 (43%)
Frame = -3
Query: 511 GTRRRSGRGRDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRDPKNGPGHEIARDLG 332
GT+ GR R+ D P + L S + K + ++ERD K E+ ++L
Sbjct: 318 GTKEHPGRTREIGSD-VPWKHGLPQYSS---QYRKRKVSKEERDARLKAELKVEVIQEL- 372
Query: 331 PGTERSLNLEKGSGLGRVIASGLAPTVAAPRVVLTEIPKHPT 206
E S+N + +V+A P V P V LT +H T
Sbjct: 373 ---EASMNARVEERVNKVLADMNIPRVTTPAVQLTPRVQHDT 411
>07_03_1160 - 24430240-24431268
Length = 342
Score = 26.2 bits (55), Expect(2) = 4.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 185 TPTLPPLPDKSVPIIEKAPDI 123
TP +PPLP+ VP + K PD+
Sbjct: 69 TPGVPPLPNPDVPPMNK-PDV 88
Score = 21.0 bits (42), Expect(2) = 4.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 212 PHDNKSRDRTPTLPPLPD 159
P+D D+ P L P PD
Sbjct: 39 PYDYPKPDQPPPLLPTPD 56
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 511 GTRRRSGRGRDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRDPKNGPGHEIARDLG 332
G R+ + D D ++L+ D++ GKE PE +D +G ++RD
Sbjct: 707 GQARKLAKMEDESDDGTDEYSLLNSWIDIL---GKEELPEVAKDSSVTSGRSRVLSRDAS 763
Query: 331 PGTER 317
G+ R
Sbjct: 764 RGSRR 768
>02_05_0684 -
30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 418 ESGKERAPEKERDRDPKNGPGHEIARDLGPGTE 320
+S KE+ ++++D+D K GP ++A GPG E
Sbjct: 564 KSLKEKFSQQDKDKDAKEGPNLQVA---GPGGE 593
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 209 HDNKSRDRTPTLPPLPDKSVPIIEKAPDIN----DENTSPDNMD 90
H +RD TP LP +P VP+ P N ++ +P+N++
Sbjct: 552 HGQDTRDPTPPLPAVPPVQVPVPPVQPHGNWFPVEDGMNPNNLN 595
>01_06_0218 - 27644712-27645017
Length = 101
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 505 RRRSGRGRDADPDPAPVVNVLDLGSDLVPESGKERAP 395
RR G GRD D APVVNV ++ + + AP
Sbjct: 37 RRLLGSGRDDDAVAAPVVNVAAAAEPIMQQPAQMVAP 73
>03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501
Length = 274
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -3
Query: 505 RRRSGRGRDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRD 374
R R+ R D DPDP P + L L G+ R R D
Sbjct: 12 RARAARLSDPDPDPDPPADALHDPHGLADRRGRRRGCRPRRQLD 55
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 430 DLVPESGKERAPEKERDRDPKNGPGHEIARDLGPGTERSLNLEKGSGL 287
DL + KE E +D D K +A+D E L LEKG L
Sbjct: 198 DLEKDHDKEDRDESGKDND-KKADDSSVAKDTNSEPEAQLELEKGMPL 244
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 418 ESGKERAPEKERDRDPKNGPGHEIARDLGPGTERSLNLEKGSGLGR 281
E +ER+ ++ R+RD K H RD ER + E+ G R
Sbjct: 315 ERTRERSHDRTRERDSKEDRHHHRDRDRTRDRERGRDRERDHGRDR 360
>09_02_0406 -
8629287-8629304,8629384-8629865,8629977-8630291,
8630381-8630576
Length = 336
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 505 RRRSGRGRDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRDPKNGPGHE 350
RR + RGR P PA GS P +G A ++ D P HE
Sbjct: 210 RRATFRGRRMSPSPASNAEAATGGSASTPAAGSNVAEDERVDAVPSPIRQHE 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,232
Number of Sequences: 37544
Number of extensions: 254414
Number of successful extensions: 1078
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -