Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E17
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    31   0.60 
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    28   5.6  
AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 484 RDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRD 374
           + AD D   V+ V+D   +  PES K++  E+ERD++
Sbjct: 716 KKADEDDCVVIAVVDPDQEQTPESEKKKDGEEERDKN 752


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 526 NVPVHGTRRRSGRGRDADPDPAPVVNVLDLGSDLVPESGKERAPEKERDR 377
           +V + G R RSG+G   DP  +  V+     SD     G E + EK RDR
Sbjct: 595 DVIISGRRYRSGQGVTEDPMSSSYVHDCRADSD---REGVESSSEKRRDR 641


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 265 LAPTVAAPRVVLTEIPKHPTIISHATELPLFLLYRI 158
           L PT + P++V+   P +P ++  A ++P+   Y I
Sbjct: 501 LPPTTSTPKIVVNLTPIYPDMLMKANKVPMIPAYGI 536


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 436 GSDLVPESGKERAPEKERDRDPKNGPGHEIAR 341
           G D  PE G+++  ++ RDR P  G   E+ +
Sbjct: 305 GEDREPEKGRKQEHKESRDRRPARGDSGEVEK 336


>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 200 KSRDRTPTLPPLPDKSVPIIEKAPDINDENTS 105
           K +  TP LP +  KSVP+I + PD    + S
Sbjct: 16  KEQRPTPKLPLIKGKSVPMISELPDEEQNHRS 47


>AL110500-9|CAE54920.1|  586|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8b protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 200 YYRGVFWNLCENDSWSGDCGSETA 271
           + +G+ W++C  D W  + G + A
Sbjct: 532 FVQGIIWDICSYDQWGVELGKQLA 555


>AL110500-8|CAB60430.1|  551|Caenorhabditis elegans Hypothetical
           protein Y87G2A.8a protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 200 YYRGVFWNLCENDSWSGDCGSETA 271
           + +G+ W++C  D W  + G + A
Sbjct: 497 FVQGIIWDICSYDQWGVELGKQLA 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,993
Number of Sequences: 27780
Number of extensions: 207955
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)