Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E17
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.074
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.074
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = -3

Query: 460 PVVNVLDLGSDLVPESGKERAPEKERDRDPKNGPGHEIARDLGPGTERSLNLEKGSGLGR 281
           PV+   ++  +  P S KE  P+KER       P     ++     E+++N    +    
Sbjct: 770 PVIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQS 829

Query: 280 VIASGLAPTVAAP 242
           V+ + +  T+  P
Sbjct: 830 VVVTNVTTTINTP 842


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 22/77 (28%), Positives = 30/77 (38%)
 Frame = -3

Query: 481 DADPDPAPVVNVLDLGSDLVPESGKERAPEKERDRDPKNGPGHEIARDLGPGTERSLNLE 302
           DAD   +P+    D GS   P S          D D       E+A D  P T+  L ++
Sbjct: 307 DADGAVSPLRREKDRGSREYPTSNAT-------DTDGTKERTEEVALDRTPVTQGLLRVK 359

Query: 301 KGSGLGRVIASGLAPTV 251
           K   L    + G  PT+
Sbjct: 360 KEEELQEAPSCGGGPTI 376


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 161 PVKEEEWEFCRVTYYRGVFWNL 226
           P++EEEWE    + Y+  F N+
Sbjct: 340 PLEEEEWENENESDYQDAFCNI 361


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 200 KSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDN 96
           ++ +R P LPP   + +P +   P     +T+PD+
Sbjct: 632 ETEERLPPLPPKRIRKMPSMPLLPRPISCHTTPDS 666


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 244 PRVVLTEIPKHPTIISHAT 188
           PRV+L+   K PT++   T
Sbjct: 633 PRVILSSGAKSPTVLEELT 651


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 244 PRVVLTEIPKHPTIISHAT 188
           PRV+L+   K PT++   T
Sbjct: 633 PRVILSSGAKSPTVLEELT 651


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 244 PRVVLTEIPKHPTIISHAT 188
           PRV+L+   K PT++   T
Sbjct: 633 PRVILSSGAKSPTVLEELT 651


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,403
Number of Sequences: 438
Number of extensions: 2944
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)