Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E14
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    97   1e-21
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    28   0.59 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   3.1  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   5.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   7.2  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 46/86 (53%), Positives = 60/86 (69%)
 Frame = -1

Query: 299 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 120
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 119 XKGXXXXXXXXXXXXXXXRNDDEDSA 42
            +G               R+D++D A
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA 91


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 151 RMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 330
           R+  +P+ F    R+    +G   L PT   R+ K   Y    TS M  L  +S LGL +
Sbjct: 45  RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103

Query: 331 VILSFVYRIQL 363
            +      + L
Sbjct: 104 FLFVIGMEVDL 114


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 126 EFV*AGVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 248
           E V   +Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 290 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 192
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 262  VYSRVTTSFMADLPFLSPLGLAIVILS 342
            V+   +TSF  D+ FLS L LA+  L+
Sbjct: 1237 VFYEESTSFALDVDFLSSLQLAVESLT 1263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,840
Number of Sequences: 5004
Number of extensions: 26770
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)