Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E12
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    26   4.9  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   4.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    26   6.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.6  

>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 241 VAIKNAHGLAPYCDVIAVK---PEKIGKVSKKGTY 336
           + +K A   APYCD + V    P+ I K  K G++
Sbjct: 88  IMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSF 122


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 217 KNICVVENLYSRHADAEYVNMKMHSFILNLYKHEN 113
           K++    + +S H D    N+ +    LN+YKH N
Sbjct: 707 KDVVYCMSFFSPHMDFNTFNLNIGPIRLNVYKHLN 741


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 485 IHNLNPCLIYHDQYSTLQGNYIIDVY 562
           + N+    +YHDQ+S  Q + ++ V+
Sbjct: 769 LQNVQMLFVYHDQFSRAQEDELVSVF 794


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 440 PDSVAIFK*VGFF*NIHNLNPCLIYHD-QYSTLQGNYIIDVYGSLK 574
           P SV       F+  +     C I HD     +Q +Y +DVYG+++
Sbjct: 225 PLSVECIFCTNFYEPVFCFEHCKIVHDWDIKKIQKDYSLDVYGAIR 270


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 279 TIWRKSMRILNCNASCHVFVLK 214
           ++W   +R  +C+ SCH   LK
Sbjct: 717 SVWGSELRCFHCSISCHSRCLK 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,039
Number of Sequences: 5004
Number of extensions: 56972
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)