Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E12
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0872 - 22190468-22190575,22190652-22190910,22191005-221911...    28   6.8  

>07_03_0872 -
           22190468-22190575,22190652-22190910,22191005-22191108,
           22191245-22191423,22191565-22191670,22191797-22191940,
           22192024-22192179,22192274-22192378,22192483-22192545,
           22192993-22192995
          Length = 408

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 335 YVPFLLTLPIFSGLTAM---TSQYGASPCAFLIATHHVTYLY*KYMRC*ESIQ*TCR 174
           ++ ++LTL IF G  A    T   G+     LIAT +V+ L  +YM   E I+ T R
Sbjct: 261 FMIYVLTLSIFPGFLAEDTGTHSLGSWYALVLIATFNVSDLIGRYMPLIEQIKLTSR 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,795
Number of Sequences: 37544
Number of extensions: 309664
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)