Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E08
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   3.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   3.8  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   6.7  

>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 577 VPLSDFL*RIHXVFYPFSLLHTSIATFASLLHAIAFHPPLSLSNKHITTAI 729
           V +SD + RI+  F  FSL H  +   +S L    +   LS+++  I T++
Sbjct: 470 VAISDIVTRINSAFGDFSLDHLPVTILSSDLSYPQYLALLSVADAFIVTSL 520


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 394 RSLPSYPYRLSHNPSISSXVYLXL 465
           R LPS PYR+   P ++   YL L
Sbjct: 232 RELPSIPYRVLDAPGLAGDFYLNL 255


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 629 RYSTHPSQHSHLCCMQSPFIRHFRCPT 709
           ++ T  S+H+++ C   P++  F C T
Sbjct: 12  QFLTWNSKHNYIVCCSGPYLLGFSCST 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,071
Number of Sequences: 5004
Number of extensions: 50973
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)