Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_E08
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 37 0.013
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 37 0.013
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 37 0.013
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 37 0.013
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 36 0.023
U53180-7|AAA96289.1| 425|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical pr... 28 6.2
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 28 6.2
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Frame = -3
Query: 706 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRXEYVRGSLKVAPXTEKLRSARXGW 539
WT A R+ + R + G+T R + E +R V ++ + GW
Sbjct: 755 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 814
Query: 538 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 383
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 815 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 867
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Frame = -3
Query: 706 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRXEYVRGSLKVAPXTEKLRSARXGW 539
WT A R+ + R + G+T R + E +R V ++ + GW
Sbjct: 930 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 989
Query: 538 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 383
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 990 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 1042
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Frame = -3
Query: 706 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRXEYVRGSLKVAPXTEKLRSARXGW 539
WT A R+ + R + G+T R + E +R V ++ + GW
Sbjct: 669 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGW 728
Query: 538 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 383
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 729 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 781
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Frame = -3
Query: 706 WTTKVADERRLHAAEMRMLRWMCGVT----RMDRIRXEYVRGSLKVAPXTEKLRSARXGW 539
WT A R+ + R + G+T R + E +R V ++ + GW
Sbjct: 281 WTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGW 340
Query: 538 YGHVMRRXENEVVKRVLTMNVERF-RXRGRPXKKWMDCVKDDMGRRGVSEEMV 383
GHV RR + + + R GRP +W D ++ ++ R E++
Sbjct: 341 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 393
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 36.3 bits (80), Expect = 0.023
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Frame = -3
Query: 706 WT-TKVADER-RL-HAAEMRMLRWMCGVTRMDR-IRXEYVRGSLKVAPXTEKLRSARXGW 539
WT TK ER R+ HAA R L + + +R I E VR K+ ++ + GW
Sbjct: 66 WTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGW 125
Query: 538 YGHVMRRXENEVVKRVLT-MNVERFRXRGRPXKKWMDCVKDDMGRRGVSEEM-------V 383
GHV RR + + + R GRP +W D ++ ++ R ++
Sbjct: 126 AGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQA 185
Query: 382 YDRRVWK 362
DR+ WK
Sbjct: 186 KDRKAWK 192
>U53180-7|AAA96289.1| 425|Caenorhabditis elegans Hypothetical
protein D1014.2 protein.
Length = 425
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 11 LVNFIHTHFNHISCFKSYS--IHLQFTFVVNVHKNTFLNIKCLCVVKFNS 154
+V+FIH + + Y IH+ F ++ + +T LNI +C ++ NS
Sbjct: 205 IVHFIHPKTRAANKYARYVVYIHMIFVVIIPMFLSTSLNILLVCALRKNS 254
>Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical
protein F58G1.6 protein.
Length = 421
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 523 SSHVHTIPXVHSSASLSXVPLSDFL*RIHXVFYPFSLLHTSIATFASLLHAIAFHPP 693
S+ + +P S ++ P S F + VF P +L T FA H H P
Sbjct: 337 STTYYCVPPSEMSFTVDPPPYSTFGAKTDPVFIPIHMLKTPYRPFAPAYHMFRNHGP 393
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 32 HFNHISCFKSYSIHLQFTFVVNVHKNTFLNIKCLCVVKFNSTN 160
H S F++ + H TFV K+TF +K +C NST+
Sbjct: 1668 HQKPASNFENTAYHSTMTFVETYTKDTFEKLKVVCRKLQNSTD 1710
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,076,180
Number of Sequences: 27780
Number of extensions: 283847
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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