Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E04
         (838 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF695416-1|ABS01454.1|  222|Homo sapiens extraembryonic spermato...    49   2e-05
BC041372-1|AAH41372.2|  296|Homo sapiens LOC283514 protein protein.    31   3.9  
AK128408-1|BAC87425.1|  189|Homo sapiens protein ( Homo sapiens ...    31   6.8  

>EF695416-1|ABS01454.1|  222|Homo sapiens extraembryonic
           spermatogenesis homeobox 1-like protein protein.
          Length = 222

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
 Frame = -3

Query: 710 CQACHPWVLCHP*EICLQWEICHQEVVCHQWEIC---LQWEICPQWEICPQWVTCH---Q 549
           CQ   PW LCHP      W +CH       W +C     W +C        W  CH    
Sbjct: 128 CQPGRPWRLCHPGR---PWRVCHPG---RPWRVCHPGRPWRVCHPGR---PWRLCHPGRP 178

Query: 548 WESCH---PWETCHHGLPLMTM 492
           W  CH   PW  CH G   +T+
Sbjct: 179 WRLCHPGRPWRLCHPGHMCLTL 200


>BC041372-1|AAH41372.2|  296|Homo sapiens LOC283514 protein protein.
          Length = 296

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 354 HHLSRLHCNYFLLHNFDHKILPHYILHH 437
           HHLS  HC++   H+  H   PH+ LHH
Sbjct: 93  HHLSHHHCHHRHHHHLRHHAHPHH-LHH 119


>AK128408-1|BAC87425.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46551 fis, clone THYMU3038687. ).
          Length = 189

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -3

Query: 629 CHQWEICLQWEICPQWEICPQWVTCHQWESCHPW 528
           CH   +     + P W  C     C +W  C PW
Sbjct: 64  CHGPHLLSLTLLQPPWTGCRSTAACSRWRGCRPW 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,475,401
Number of Sequences: 237096
Number of extensions: 1767526
Number of successful extensions: 10590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10558
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)