Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_E03
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 36 0.009
06_03_0094 + 16573075-16573268,16574636-16574996 29 1.3
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 29 1.7
06_01_0810 + 6111962-6112507 28 2.3
05_01_0268 - 2053420-2053539,2053636-2053710,2053805-2053867,205... 28 2.3
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 3.0
08_02_1334 - 26224546-26225337 27 5.3
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 5.3
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 7.0
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 27 7.0
02_01_0018 + 119890-120238,120331-120424,120518-121529 27 7.0
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 26 9.2
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 26 9.2
04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899 26 9.2
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 26 9.2
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 287 HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 159
+T V TS PL +HH +Q S + F+ RV + + + PH+PS F
Sbjct: 78 YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121
>06_03_0094 + 16573075-16573268,16574636-16574996
Length = 184
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 284 CDRIP---RSPQRRVATQRFATSSWQMALNNSSAGRI 385
C R+P R+P RR T + S W +AL S++ RI
Sbjct: 44 CPRLPPVRRAPPRRHLTHKREGSEWSLALTASASPRI 80
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 162 YGRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAF 296
+GR+ A++ VFN+ + L +++ GP DAG + S T +
Sbjct: 256 HGRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTTTW 299
>06_01_0810 + 6111962-6112507
Length = 181
Score = 28.3 bits (60), Expect = 2.3
Identities = 22/65 (33%), Positives = 25/65 (38%)
Frame = +3
Query: 165 GRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSGE*QHNDLQLH 344
G MRQ E T VL D+ + +E TA RSG QLH
Sbjct: 90 GMLMRQEEQR---ETTATAATVLGAAGHDKKEVPPAEEEKKTA---RRSGFWARLQQQLH 143
Query: 345 HGKWH 359
HG WH
Sbjct: 144 HGSWH 148
>05_01_0268 -
2053420-2053539,2053636-2053710,2053805-2053867,
2053977-2054093,2054332-2054436,2054559-2054768,
2054858-2054983,2055061-2055114,2055198-2055278,
2055419-2055526,2055579-2055719,2056396-2056629
Length = 477
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 275 RRKCDRIPRSPQRRVATQRFATSSWQMALNNSSAG 379
R+ C+RI R Q FAT+S + L NS+AG
Sbjct: 437 RQLCERISSDMGARNTEQIFATASLEDDLQNSNAG 471
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 348 HDEVANRCVATRRCGDRGMRSHFRRHQR 265
H++ +R V CG + ++ +F+RHQR
Sbjct: 405 HNKSCHRHVVCDVCGTKQLKKNFKRHQR 432
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 292 AVTLSSAPASIGPWSTTMTCSTARKCSVREL 200
+VTL+ A++GP T + A C++R+L
Sbjct: 9 SVTLADQLAAVGPAGTAAATAAAGSCNLRDL 39
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 290 GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 168
G VG S NR + +H + S + K+++NL L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 269 SVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSI 162
S N PL+Y H SS + K +ENL SL V +
Sbjct: 1315 SSNIPLLYKHYDGQSSSLVIKNLENLKGSLGEVQEL 1350
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 110 RCYRSCRRPECPEWTSR---IWKVHEAS*NGGFQLSYGTFSSCTARHGGRPR 256
R ++ R P PE R I+++ + G Q GTF C+ HG PR
Sbjct: 376 RSFKEKRSPYAPESGVRYDGIYRIEKCWRKTGVQ---GTFKVCSDEHGDHPR 424
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 87 ALGDVR--RSGAIGLVEGQNALNGPPEYGRYMRQA 185
ALGD+ S +I L+E Q+ L PP R MR+A
Sbjct: 255 ALGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKA 289
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 372 DELFSAICHDEVANRCVATRRCGDR 298
DE F + H + + CV RR GDR
Sbjct: 113 DENFPSSSHPLIGHMCVTFRRTGDR 137
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 287 HTFVGTSVNRPLVYHH--DVQYSSKMFRKRVENLHFSLPHVPSIF 159
+T + T P +HH Q S + F+ V + + + PHVPS F
Sbjct: 87 YTVLPTPAVLPSHHHHHGQSQISQENFQDWVPSNNVAAPHVPSAF 131
>04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899
Length = 327
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 93 GDVRRSGAI--GLVEGQNALNGPPEYGRYMRQAEMEVFNSLTE 215
GD R AI G + + PP+YG Y R E +L E
Sbjct: 31 GDPFRVAAISDGFDDDAGCMAAPPDYGEYHRSLEAHGARTLAE 73
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 266 RWCRRKCDRIPRSPQRRVATQRFATSSWQMALNNSSA 376
RW + R+P + +RRV A SS +++ +SS+
Sbjct: 65 RWEKGSTRRVPAASERRVERCAAAVSSGPLSMRSSSS 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,398
Number of Sequences: 37544
Number of extensions: 252526
Number of successful extensions: 646
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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