Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_E03
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.71 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   2.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 218 MFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVNLRMKSERG 39
           M RK++  L  ++   P+    + +  +    T++     ITQ G G  F+ ++   ERG
Sbjct: 461 MNRKQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIERG 520

Query: 38  S 36
           +
Sbjct: 521 T 521


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 74  YSRFRLG*CSQKRCYRSCRRPEC--PEWTSRIWKVHE 178
           Y R +   C  K+C     RPEC  PE+   + +  E
Sbjct: 234 YMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEE 270


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 192 PFQLASCTFHIREVHSGHSGLR 127
           P  L + T  +RE+H  ++GLR
Sbjct: 277 PEGLFASTRDLREIHLAYNGLR 298


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +2

Query: 74  YSRFRLG*CSQKRCYRSCRRPEC--PEW 151
           Y R +   C  K+C     RPEC  PE+
Sbjct: 31  YMRRKCQECRLKKCLTVGMRPECMVPEY 58


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 136 WPSTRPIAPLL 104
           +PS RP APLL
Sbjct: 877 FPSVRPFAPLL 887


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -2

Query: 192 PFQLASCTFHIREVHSGHSGLR 127
           P+ + +CT HI     G + ++
Sbjct: 167 PYDILNCTIHIASWSHGSNEIK 188


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 93  GDVRRSGAIGLVEGQNALNGPPEYGRYMRQAEMEVF 200
           GD+   G   + E   A  GP  Y R +++ E  +F
Sbjct: 55  GDIVLGGLFPVHEKGGASCGPNVYNRGVQRLEAMLF 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,296
Number of Sequences: 438
Number of extensions: 2228
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)