Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_D24
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 177 1e-45
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.98
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 1.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 28 1.7
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 3.0
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 27 4.0
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.2
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 6.9
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 6.9
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 6.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 6.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 6.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.2
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 177 bits (432), Expect = 1e-45
Identities = 91/152 (59%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
Frame = -3
Query: 761 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGL-TKGKHGFHVHEFGDNTNGCTSAG 591
+AV VLRGD VSG V F+Q D+ S V V ++ G K GFH+H+FGDNTNGCTSAG
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 590 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 411
HFNPE + HG ++AVRHVGDLGN+E+ + G K + DS ISL G NSIIGRT+V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121
Query: 410 ADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 315
A DDLG G E S TGNAG R ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 28.7 bits (61), Expect = 0.98
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +3
Query: 285 TYEK*KYLNLSQANDSTSNTATSITSGLT*LMATE----SQVIRVSMDN*SATNDAVRSM 452
T++K + N + D+ S+ TS + G++ + + S + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550
Query: 453 KRDLRIL 473
+RDL L
Sbjct: 551 QRDLLFL 557
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 589 LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKILRSLFM 449
L++T + + +PVLLY + ++ + L++ ES + + KIL +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 721 FSSISRMKSHLLLFLERSRA*LRVNTVSMCTNLVTTQMVAHQLELISTLKNKIMVVPVLL 542
FSS+S + F S + N S + TT ++ + T + I+ P++
Sbjct: 508 FSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIIS 567
Query: 541 YAMSATSVTLRQLK---TLESLKYQSKILRSLFMDLTASLVAL 422
+++ATS + L T + Y S ++ S D ++SL+ +
Sbjct: 568 SSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITV 610
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = -2
Query: 351 WW-PYC-----LWSHWLG*DLNTFIFHMLGLVLQ 268
WW PY +WS W+ +L T FHM + LQ
Sbjct: 413 WWVPYLEYVRFMWSPWIIDNLGTVSFHMYVIYLQ 446
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 603 ATICVVTKFVHMETVFTLSQ-ALDLSRNNNR*LFILLIEENSSANIT 740
A +C+ + VH++ V +LS+ +S N N+ L +LLI S+ T
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 274 YQAQHMKNESI*ILAKPMTPQAI 342
Y +NES +LAKPMTP +
Sbjct: 618 YDPSTSENESASVLAKPMTPPGL 640
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 545 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 462
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 73 ILHNFRNAIKKNFITSYRLTTTTD 144
+ HNFRN + +N + S LT D
Sbjct: 323 VFHNFRNGVCRNLVCSDLLTRGID 346
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 583 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 482
STLK + + PV L A+ ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -3
Query: 527 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 348
D+ NI+ ++ + ++++ Q++ N + R + + L L H L+ G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485
Query: 347 GRIACGVIGLAKI 309
G+ AC + L I
Sbjct: 486 GQHACAIASLLNI 498
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 31 INACTKDNVKPKIA-ILHNFRNAIKKNFITSY-RLTTTTDYAYIFSLSDRLILPSKTL 198
++ T D V+ K+ L N+++ I K ++ T ++ +FSL +RL LP+ L
Sbjct: 928 LSELTDDVVQKKVLESLDNYKSGIWKLVLSGLPNCKTVFEHLLLFSLEERLDLPAAFL 985
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 604 QPFVLSPNSCTWKPCLPLVKPWTSPETT 687
+PF L+P + + P +KPW P T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,907
Number of Sequences: 5004
Number of extensions: 60448
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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