Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D23
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   3.7  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   6.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   8.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   8.6  

>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 388 YKIFVFGHGLPNIQYITQAHLHCALDI 308
           YK+ V   G+PN+ Y  Q  LH  L I
Sbjct: 59  YKLLVGNAGIPNVYYFGQEGLHNILVI 85


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 689 VLGDRFRSRRQTIVLMTLLKIGWKKNL 609
           VLGD  RS R     ++  K+GWK +L
Sbjct: 31  VLGDIARSPRMQYHAVSFAKLGWKVDL 57


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 471 FVLHCWFFFLVK*CIFYGTTVSFTYT 548
           F L C++  L   C+ Y T V+ T T
Sbjct: 142 FFLECFYLNLYSICVLYSTFVAITKT 167


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 167  IHTRSEPAKQIDRLSV*NRHVDVVAIRDIFTNNSQDN 277
            + +  E A Q  RL++ N H + V  R +  NN  DN
Sbjct: 1373 LKSEEEEASQHRRLNLVNNHKEHVLERAMSENNKMDN 1409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,136
Number of Sequences: 5004
Number of extensions: 66185
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)