Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D18
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   105   1e-23
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   2.5  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   5.7  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    26   5.7  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    26   5.7  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   10.0 
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   10.0 

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  105 bits (251), Expect = 1e-23
 Identities = 53/113 (46%), Positives = 76/113 (67%)
 Frame = -2

Query: 790 IIYNKFKXVVSYAQSDLPLYXKKSIESASKLTAYDSXDSDVLQSYTEFSLASLLFYALKE 611
           ++YNKF   VS+      LY  K+I  +  L+AY+  D +V Q   EF+ A+ +F A+ E
Sbjct: 189 LVYNKFASAVSFETVMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAE 247

Query: 610 GACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 452
             CSE SSR  AM+NASK+AG+MI+K ++ +NR RQA IT ELI+I++GA +L
Sbjct: 248 AHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASITNELIDIVTGANSL 300


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 218 VTCLDDKSFKNIFNKKNGQKFFG 286
           +TC  D  F +I+N KN   F+G
Sbjct: 189 MTCAIDDMFSSIYNSKNKSTFYG 211


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 679 DSDVLQSYTEFSLASLLFYALKEGACSEQ 593
           D D+ Q Y   ++ASLL ++L +  CS Q
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 22/108 (20%), Positives = 44/108 (40%)
 Frame = -2

Query: 787 IYNKFKXVVSYAQSDLPLYXKKSIESASKLTAYDSXDSDVLQSYTEFSLASLLFYALKEG 608
           I+N+FK + +  Q   P   +       +   + +   D L+S  E +++ L+    KE 
Sbjct: 71  IFNRFKSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLI--PTKEE 128

Query: 607 ACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISG 464
           A    +  +       K  G    ++ L F+  R  V+  + + I +G
Sbjct: 129 AERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNG 176


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 197 LLQLVRVPPKIARY*LLPSFPYFF 126
           LLQ+    PK+A   ++P+F YFF
Sbjct: 113 LLQVAPFAPKLAYNFIVPAFQYFF 136


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -2

Query: 790 IIYNKFKXVVSYAQSDLPLYXKKSIESASKLTAYDSXDSDV----LQSYTEFSLASLLFY 623
           IIYN  K  ++ ++ +  L   +++  ASK   Y   ++      +Q   E+ + S LF 
Sbjct: 395 IIYNMCKFKITKSEHERELNQLRNMAEASKTIDYKEDETAPTERRIQKILEYDILSKLFS 454

Query: 622 ALK 614
           A K
Sbjct: 455 AAK 457


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = -2

Query: 679 DSDVLQSYT--EFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRT- 509
           ++++L  +T  E +LAS +++ +  GA   +   ++A     +     +  L LTF +T 
Sbjct: 121 ENEILNEFTPVEVALASDIYFCVLNGAPVREYPLLSAWYLKIEKQKPFVQALKLTFEKTL 180

Query: 508 -RQAVITRELIEI 473
            + AV + E I +
Sbjct: 181 GQPAVTSTEKIPV 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,014
Number of Sequences: 5004
Number of extensions: 51296
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)