Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D18
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...   109   3e-24
07_03_0571 - 19602755-19603831                                         62   5e-10
01_01_0616 + 4586086-4586835                                           29   6.0  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score =  109 bits (262), Expect = 3e-24
 Identities = 57/130 (43%), Positives = 89/130 (68%), Gaps = 10/130 (7%)
 Frame = -2

Query: 808 EFGSGKIIYNKFKXVVSYAQSDLPLYXKKSIESASK------LTAYD----SXDSDVLQS 659
           E+ + ++++NKF  V+S+  +   +   + +E  S+      L +Y+       S++LQ+
Sbjct: 238 EYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEILQN 297

Query: 658 YTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELI 479
            TEF  + +++ A  E ACSE  +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELI
Sbjct: 298 LTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELI 357

Query: 478 EIISGAAALD 449
           EIISGA+AL+
Sbjct: 358 EIISGASALE 367


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 32/85 (37%), Positives = 52/85 (61%)
 Frame = -2

Query: 706 SKLTAYDSXDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLT 527
           S +  ++     +L +     L S +  AL+E   SE ++RM+AM +A+ NA E+   L+
Sbjct: 273 SPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLS 332

Query: 526 LTFNRTRQAVITRELIEIISGAAAL 452
           + +NR RQA IT E++EI++GA AL
Sbjct: 333 MVYNRQRQAKITGEILEIVAGADAL 357


>01_01_0616 + 4586086-4586835
          Length = 249

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 413 CISSFFVDHLFC*PCCYFYHQKKYQKIF 330
           C S F   H FC  CC+F+H+     +F
Sbjct: 40  CASCF---HAFCTHCCWFHHEPTIHMVF 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,790
Number of Sequences: 37544
Number of extensions: 336509
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)