Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D18
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 40  SLVSRECCRDGSCPVSAS 93
           +LV +E C+ G C V  S
Sbjct: 115 NLVGKEACKQGVCTVEVS 132


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 40  SLVSRECCRDGSCPVSAS 93
           +LV +E C+ G C V  S
Sbjct: 115 NLVGKEACKQGVCTVEVS 132


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 440 GGLVQGGRTRDDLDELPGDDS 502
           GG+ Q G+ +++ D+   D+S
Sbjct: 73  GGIQQAGKPKEETDDKDDDES 93


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 374 VNKINDLQKMRKCRSFGASIAFGG 445
           +NK+ DL+  + C S G   +F G
Sbjct: 484 INKLEDLRNKKSCHS-GYKDSFAG 506


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 374 VNKINDLQKMRKCRSFGASIAFGG 445
           +NK+ DL+  + C S G   +F G
Sbjct: 484 INKLEDLRNKKSCHS-GYKDSFAG 506


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 374 VNKINDLQKMRKCRSFGASIAFGG 445
           +NK+ DL+  + C S G   +F G
Sbjct: 484 INKLEDLRNKKSCHS-GYKDSFAG 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,982
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)