Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D17
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 225 HVDIPYNXLDTDKPLFYTNNII 160
           ++DI +N     K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 225 HVDIPYNXLDTDKPLFYTNNII 160
           ++DI +N     K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 231 PSHVDIPYNXLDTDKPLFYT-NNIIXTVL 148
           P+  DI +  +   K LFYT N I+ TVL
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLILPTVL 246


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 225 HVDIPYNXLDTDKPLFYTNNII 160
           ++DI +N     K LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 10 IMLFCIFVILNVLHQSINHHFKTRTTC 90
          I  FC+  IL V  +SIN   K  + C
Sbjct: 7  IFAFCLVGILAVSEESINKLRKIESVC 33


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 243 PARAPSHVDIPYNXLDTDKPLFYTNNII 160
           P     + DI +N     K LFYT N+I
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLI 257


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -1

Query: 434 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 333
           +PY   + KV A     L +   +  +P   ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -1

Query: 434 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 333
           +PY   + KV A     L +   +  +P   ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 417 PEEGHGVEDITTRHIFSYKILS 352
           P EG  + D   RHI    IL+
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,007
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)