Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D15
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0657 + 30673852-30674624,30674815-30674833                       29   6.4  
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801...    28   8.5  
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    28   8.5  

>02_05_0657 + 30673852-30674624,30674815-30674833
          Length = 263

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -2

Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFGLGA 736
           C  C                 GE+Y   CY R +G  G GF  GA
Sbjct: 199 CSDCVSAAAGQLKAGCGYATAGEVYLGKCYARFWGNGGGGFSSGA 243


>04_04_1639 +
           34978498-34978585,34979049-34979343,34980070-34980107,
           34980655-34980788,34980868-34980973,34981451-34981536,
           34981962-34982150,34982477-34982641,34982898-34982921,
           34983235-34983348,34983605-34983850
          Length = 494

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 480 SQMYKWMMNVSGPLVYRFFIKYCSFKTNRHKNILGMYLTRTIRHCDFCNXLISCFG 313
           +Q  KW M +   L     ++YC+ K     + L  Y    +   D CN  +SCFG
Sbjct: 143 AQAMKWPMRLRVVLYLAEALEYCTSKGRALYHDLNAY---RVLFDDDCNPRLSCFG 195


>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 676 SNGSYKVQLYIDFLCHGQCACTQTETNSFGSEVSTVATSAVNFAIGSIVQVSRIKRSVAV 855
           + GS +++L  DFL   + AC  +E N   S V  +       ++  I +   +K S +V
Sbjct: 488 TEGSNRLELMDDFLEMEKLACLSSEANGHVSTVEKMKIDDTEASLSGITERDGVKDSQSV 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,511,706
Number of Sequences: 37544
Number of extensions: 363892
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)