Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_D15
(871 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family ... 62 4e-10
U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family ... 62 4e-10
U80955-2|AAM97946.1| 181|Caenorhabditis elegans Mlp/crp family ... 58 6e-09
U58749-7|AAK18878.1| 84|Caenorhabditis elegans Hypothetical pr... 39 0.004
U40933-3|AAL27241.1| 85|Caenorhabditis elegans Temporarily ass... 35 0.087
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 33 0.27
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 33 0.27
U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily ass... 32 0.61
U20861-5|AAT92079.1| 256|Caenorhabditis elegans Temporarily ass... 32 0.61
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z83319-1|CAB05908.1| 322|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81048-3|CAB02841.1| 407|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 29 5.7
>U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform a protein.
Length = 95
Score = 62.5 bits (145), Expect = 4e-10
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFGLGAGTLT 724
C C C++ LDS + E+YC+ C+GR FGPKGVGFGLGAG LT
Sbjct: 35 CFKCNMCNKLLDSCTVAPH-EAELYCKQCHGRKFGPKGVGFGLGAGCLT 82
>U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform b protein.
Length = 113
Score = 62.5 bits (145), Expect = 4e-10
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFGLGAGTLT 724
C C C++ LDS + E+YC+ C+GR FGPKGVGFGLGAG LT
Sbjct: 35 CFKCNMCNKLLDSCTVAPH-EAELYCKQCHGRKFGPKGVGFGLGAGCLT 82
>U80955-2|AAM97946.1| 181|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform c protein.
Length = 181
Score = 58.4 bits (135), Expect = 6e-09
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFGLGAGTLT 724
C C++ LDS + E+YC+ C+GR FGPKGVGFGLGAG LT
Sbjct: 103 CFKTYMCNKLLDSCTVAPH-EAELYCKQCHGRKFGPKGVGFGLGAGCLT 150
Score = 58.0 bits (134), Expect = 8e-09
Identities = 22/50 (44%), Positives = 36/50 (72%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFGLGAGTLTM 721
C C+ C++ LDS + + +++C+ C+ R +GPKG+GFG+GAG+LTM
Sbjct: 35 CFKCSMCNKLLDSMSCCEH-QAQLFCKQCHCRRYGPKGIGFGIGAGSLTM 83
>U58749-7|AAK18878.1| 84|Caenorhabditis elegans Hypothetical
protein B0496.7 protein.
Length = 84
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 870 CXSCAD--CHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFG 745
C CA+ C ++L S + G+ YC CYG FGPKG G G
Sbjct: 28 CLKCANKACGKTL-SAGSHSEHEGKPYCNRCYGALFGPKGYGHG 70
>U40933-3|AAL27241.1| 85|Caenorhabditis elegans Temporarily
assigned gene nameprotein 291 protein.
Length = 85
Score = 34.7 bits (76), Expect = 0.087
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 870 CXSCAD--CHRSLDSTNLNDGPNGEIYCRGCYGRNFGPKGVGFG 745
C C + C ++L + + ++ G+ YC CYG FGP+G G G
Sbjct: 28 CLRCENEACKKTLAAGSHSER-EGKPYCNRCYGALFGPRGYGHG 70
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 769
C C C R LD NG+ YCR Y R F
Sbjct: 81 CLKCVQCSRPLDENQTAFVKNGQTYCRDDYRRLF 114
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNF 769
C C C R LD NG+ YCR Y R F
Sbjct: 81 CLKCVQCSRPLDENQTAFVKNGQTYCRDDYRRLF 114
>U20861-6|AAA62294.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform a protein.
Length = 256
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPK 760
C +CA+C++ ++ NG+ YC+ + R F PK
Sbjct: 101 CFTCAECNQPFGEDGFHE-KNGQTYCKRDFFRLFAPK 136
>U20861-5|AAT92079.1| 256|Caenorhabditis elegans Temporarily
assigned gene nameprotein 327, isoform b protein.
Length = 256
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPK 760
C +CA+C++ ++ NG+ YC+ + R F PK
Sbjct: 171 CFTCAECNQPFGEDGFHE-KNGQTYCKRDFFRLFAPK 206
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 156 LCSQSSHXKIXXKNLWCXKIYSHFSSSYKALVGRNXCLNAILYAFTG*LYLNTQNMIL 329
+C H I +WC +++ HF +Y+ G + C N +G N N++L
Sbjct: 228 VCRYGFHPTIRNGKVWCIRVFFHFVLNYQD--GSDYCWNYFHSTLSGPADENEYNVLL 283
>Z83319-1|CAB05908.1| 322|Caenorhabditis elegans Hypothetical
protein T02D1.3 protein.
Length = 322
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 356 IVLVRYIPSIFLCLFVLKLQYFMKNL*TKGPDTFIIHLYI 475
I L+ IP++F+ +F+LK+ F++ L TK D H+++
Sbjct: 32 IPLIYLIPTVFVIMFILKV--FIRRLLTKKHDLMNPHVFL 69
>Z81048-3|CAB02841.1| 407|Caenorhabditis elegans Hypothetical
protein C41G7.4 protein.
Length = 407
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 544 NPLVSCKHSIHHY*IQFN-KW*DSSIGSSSYVLCRLNSFQATIFFSNGSYKVQLYIDFLC 720
NP+V C + + + N K I SSS+ + SF + FSN + I F C
Sbjct: 116 NPIVPCYENENCPCYKLNQKLQGLQINSSSHPPTKFASFDP-VMFSNSNSTFDRCIGFSC 174
Query: 721 HGQCACTQTETNS 759
C C TN+
Sbjct: 175 SEACGCKGNCTNN 187
>Z81082-4|CAB03096.1| 176|Caenorhabditis elegans Hypothetical
protein F42G4.3b protein.
Length = 176
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPK 760
C C C +SLD + ++C C+ F P+
Sbjct: 67 CFVCFSCKKSLDGIPFTLDKDNNVHCVPCFHDKFAPR 103
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = -2
Query: 870 CXSCADCHRSLDSTNLNDGPNGEIYCRGCYGRNFGPK 760
C C C +SLD + ++C C+ F P+
Sbjct: 494 CFVCFSCKKSLDGIPFTLDKDNNVHCVPCFHDKFAPR 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,629,637
Number of Sequences: 27780
Number of extensions: 350231
Number of successful extensions: 735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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