Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D14
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.9  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   7.9  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   7.9  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.9  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    25   7.9  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = -2

Query: 669 SNYKLETSS--FSLQFLIIIRIAKFNQI--TTDLVSSFQS--PILESNILF-FYLYES*Q 511
           S Y L TS+  +    L    IAK  Q+  +  LVS+ +S   IL + +L  FYL+++  
Sbjct: 151 SAYSLVTSTPAYIQNGLDTFTIAKLRQVYGSNSLVSTKKSIVTILLNEVLHPFYLFQAVS 210

Query: 510 SYVVFCT*FIYLSC 469
             +  C  F++ SC
Sbjct: 211 VLIWLCDSFVFYSC 224


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -2

Query: 663 YKLETSSFSLQFLIIIRI-----AKFNQITTDLVSSFQSPILESNILFFYL 526
           Y ++ +SFS+  +  +R+     AK+ QI  DLV    S +  S+ L  YL
Sbjct: 20  YLVDCTSFSMNSVTCLRLMQLLLAKYYQIPIDLVGEKLSIVSASSCLLQYL 70


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 657 LETSSFSLQFLIIIRIAKFNQITTDLVS 574
           +  SSFSLQ ++II     N    DL+S
Sbjct: 431 ISASSFSLQLMVIITAISDNLTNDDLLS 458


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 514 LRLIQIEKKYIRFKDWRLETGDEVCSN 594
           +  +Q+ +++ R K W  E G E C+N
Sbjct: 115 MEAVQVPRQWKRNKAWNTENGLENCAN 141


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 341 QKLFTWLWHGGRIIPIKGVRIAQTKSFSYGSVTEALIALFIILNCYGHLRNIG 183
           +KL T+ WH G +IP   ++I+  K  +      +       L+ +G  R  G
Sbjct: 40  EKLPTFSWHEGMLIPGSNMQISFVKDLATPRDPTSYFTFLNYLHSHGQERLSG 92


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 453 LLYFSLMYIVMSYVIYICTYIA-YN 382
           LLY S++++ ++YV+ I  Y+  YN
Sbjct: 33  LLYISIIFLFLNYVVDIVCYVKNYN 57


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 364 VDDVYIRNRNYLHGYGTVAVSYLSKVS 284
           ++D+Y+R +    GYG+  +SYL++ S
Sbjct: 87  LEDLYVRPQFRGKGYGSYLLSYLARES 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,324
Number of Sequences: 5004
Number of extensions: 54836
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)