Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D12
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...   130   3e-31
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    27   4.7  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   8.2  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score =  130 bits (313), Expect = 3e-31
 Identities = 55/112 (49%), Positives = 77/112 (68%)
 Frame = -3

Query: 868 MNVFFTAQKEQVLIDVCSVDKHLSLLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANE 689
           MN  F AQK+ + I+VC+++     L+Q  D TGG+YLK+ + +GLLQYL+    P+ N 
Sbjct: 175 MNCIFCAQKKNIPINVCNIEGGTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNL 234

Query: 688 RSKLVLPGRGRVDYRAACFCHRELLTIGYVCSVCLSVFCKFSPICTTCHTVF 533
           R  L  P +  VD+RA CFCH+++L IG+VCSVCLS+FC+    C+TCHT F
Sbjct: 235 RKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 551 CTYRAEFAENTQANRADVAD 610
           CTY A+FA+N    R DV D
Sbjct: 116 CTYAADFAKNQHNLRLDVID 135


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 615 SQSATSARFA*VFSANSARYVQRVTPSSK 529
           S S+T   F  +FS   + Y+  + PSSK
Sbjct: 39  SSSSTCPEFITIFSEGPSEYITTIYPSSK 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,551
Number of Sequences: 5004
Number of extensions: 62405
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)