Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D12
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134...   105   5e-23
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794...    29   5.0  
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     29   5.0  

>02_01_0201 -
           1347868-1347925,1348040-1348135,1348447-1348523,
           1349385-1349453,1349576-1349629,1350295-1350350,
           1350487-1350694,1350978-1351066,1351163-1351187
          Length = 243

 Score =  105 bits (252), Expect = 5e-23
 Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
 Frame = -3

Query: 838 QVLIDVCSVDKHLS-LLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEANERSKLVLPGR 662
           +V ID C V    S  LQQ   ITGG+YLK   L GL QYL  VF  + + R+ L LP  
Sbjct: 126 RVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKT 185

Query: 661 GRVDYRAACFCHRELLTIGYVCSVCLSVFCKFSPICTTCHTVF 533
             VD+RA+CFCH++ + +GYVCSVCLS+FCK+   C+TC + F
Sbjct: 186 LGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEF 228


>11_06_0227 +
           21475954-21476771,21477215-21479144,21479292-21479426,
           21480287-21480392,21480560-21480576
          Length = 1001

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 787 QGCDITGGLYLKIPSLEGLLQYL 719
           QGC++TGGLYLK       L+YL
Sbjct: 583 QGCNVTGGLYLKHIGKLRQLRYL 605


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 787 QGCDITGGLYLKIPSLEGLLQYL 719
           QGC++TGGLYLK       L+YL
Sbjct: 592 QGCNVTGGLYLKHIGKLRQLRYL 614


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,893,950
Number of Sequences: 37544
Number of extensions: 420664
Number of successful extensions: 949
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)