Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D12
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical pr...   101   5e-22
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    30   1.9  

>Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK1128.4 protein.
          Length = 345

 Score =  101 bits (243), Expect = 5e-22
 Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
 Frame = -3

Query: 868 MNVFFTAQKEQVLIDVCSVDKHLS--LLQQGCDITGGLYLKIPSLEGLLQYLLWVFLPEA 695
           MN+FF+A K+ + +DV S+    +  +LQQ  DITGG +L     + LL+ L+   L + 
Sbjct: 215 MNLFFSAAKQSICVDVVSMGDDFTGGILQQAADITGGSFLHAKKPQTLLKILMTNMLTDP 274

Query: 694 NERSKLVLPGRGRVDYRAACFCHRELLTIGYVCSVCLSVFCKFSPICTTCHTVF 533
             R+         VDYRA+C CH +L++ G+VCS+CLSV C+++PIC  C   F
Sbjct: 275 THRAVFSKLSHNSVDYRASCACHHQLVSSGWVCSICLSVLCQYTPICKVCKAAF 328


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
 Frame = -3

Query: 784 GCDITGGLYLKIPSLEGLLQYLLWVFLPEANER-SKLVLP-----GRGRVDYRA-ACFCH 626
           GC   G +   +PSL  ++ Y LW  +  ++++  KL +P         +D+    C   
Sbjct: 319 GCLTVGRILFGVPSLFEIVTYDLWKMMGCSSKKVDKLPIPLKEMNALRELDHHVIRCRIP 378

Query: 625 RELLTIGYVCSVC-LSVFCKFSPICTTCHT 539
           R      YVCSV     +C   P+    HT
Sbjct: 379 RSQDMCSYVCSVVDARCYCTIRPLARGSHT 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,836
Number of Sequences: 27780
Number of extensions: 375825
Number of successful extensions: 958
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)