Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D12
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 854 HRTEGASPDRRVLCGQTLESAATGLRHH 771
           H  EG  P R  +CG+T    A   RH+
Sbjct: 84  HGKEGEDPYRCNICGKTFAVPARLTRHY 111


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = -2

Query: 272 MSSSRTIRTVCSNKCVTSQRLSQLCLSIACSAFSLARSGGT*HFFVRAAG 123
           + S + I     N C+  +    LC  +A S F L  S      FVR  G
Sbjct: 180 LGSCKCIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREG 229


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 757 LKIPSL-EGLLQYLLWVFLPEANERSKLVLPGRGRVDYR 644
           L I S+ E  + Y+  +FL ++   S+L LP     DYR
Sbjct: 39  LSIDSINEESMTYVADIFLAQSWRDSRLRLPENMSEDYR 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,590
Number of Sequences: 438
Number of extensions: 4606
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)