Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D11
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   192   4e-50
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    29   0.56 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    28   1.7  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   5.2  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   6.9  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  192 bits (469), Expect = 4e-50
 Identities = 103/214 (48%), Positives = 143/214 (66%), Gaps = 3/214 (1%)
 Frame = -3

Query: 770 GYIDLSKXRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYFEE 591
           GYIDLSK RVS ED+ KC ER+ K+KAV+SI+RH+AE    + +  LE +Y    W    
Sbjct: 81  GYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KHNVPLETMYTTIGWPL-- 134

Query: 590 KYKKKASAYDFFKQAAVDPSVLDECGLDEETKDV---LLANIKRKLTSQAVKIRADIECA 420
            Y+K   AYD FK A  +P  + E GL+     V   LLA I R+LT Q +KIRAD+E  
Sbjct: 135 -YRKYGHAYDAFKLAISNPDHVFE-GLEPPKSGVINDLLAQISRRLTPQPIKIRADVEVT 192

Query: 419 CYGYEGIDAVRAALKAGLALSTVDMPIKINLIAPPLYVMTTSTPEKTDGLKALQDAIDKI 240
           C+GYEGI+A++AALKA   + T ++PIK+ L+APPLYV+ T+  +K+ GLK L++AI  I
Sbjct: 193 CFGYEGINAIKAALKAAEDVHTEEVPIKVKLVAPPLYVLLTNALDKSLGLKKLEEAIGAI 252

Query: 239 QENITEAGGVFNIQMAPKVVTATDEAELARQMER 138
           +++IT + G   ++M PK V+ TDE ELA  M++
Sbjct: 253 EKSITASNGTCTVKMKPKAVSETDELELADLMKK 286


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 611 TAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDV 489
           T +YFE  +     A D F Q  +DP  L+EC  D E + V
Sbjct: 107 TNYYFEVSHDALYGALDRFAQFFIDPLFLEEC-KDREIRAV 146


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 25/90 (27%), Positives = 43/90 (47%)
 Frame = -3

Query: 686 NSILRHVAELLHYETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLD 507
           N +L+   E  H+ TSE+LEEL K  A   +++     +A +   QA +    L+    D
Sbjct: 401 NKLLKE--EHKHHSTSEKLEELSKYVASIQDKERNNGQNALEL--QARIQQ--LERRNED 454

Query: 506 EETKDVLLANIKRKLTSQAVKIRADIECAC 417
              K +    I+RKL +   +++ +I   C
Sbjct: 455 MYNKLLAEEIIRRKLHNDIQELKGNIRVFC 484


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 679 SCDM*QSSSIMKLLSNWKNFIKKQLGTLKRNIRRKPRHMTSS 554
           +C M  + +  KLL+ ++N + +QL  L+   +  P  MTS+
Sbjct: 615 NCGMKLNRTKEKLLTPFRNLLMEQLNELQAKNQETPSEMTST 656


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 635 QLEELYKKTAWYFEEKYKKKA-SAYDF 558
           Q+EEL  KT WY+  + +K   S Y++
Sbjct: 470 QIEELDAKTPWYYHYELEKDVKSTYEY 496


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = -3

Query: 737 AEDIYKCTERYAKA----KAVNSILRHVAELLHYETSEQLEELYKKTAWYFEEKYKKKAS 570
           A+  YK T R  K     +A N +   +  L +     + E+  +K   Y +E +     
Sbjct: 30  AQVSYKYTNRSPKMALNQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESF----- 84

Query: 569 AYDFFKQAAVDPSVLDECGLDEETKDV 489
            Y+F  +   DP        D ETKD+
Sbjct: 85  -YEFMHEFEFDPENSISLNYDSETKDL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,970
Number of Sequences: 5004
Number of extensions: 46513
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)