Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D11
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.78 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   4.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 14/71 (19%), Positives = 34/71 (47%)
 Frame = -3

Query: 761 DLSKXRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYFEEKYK 582
           D+ +    ++ I + TE   K   ++S++    + LHYET   +    ++  W +  + +
Sbjct: 678 DICQLLKDSQYIREQTESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRAR 737

Query: 581 KKASAYDFFKQ 549
            + S ++ + Q
Sbjct: 738 SE-SEFEMYHQ 747


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 380 KLLVQHQCLHNHSKR 424
           KL V H C+ NH K+
Sbjct: 92  KLHVSHTCIENHLKQ 106


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 306 NDYLNS*ED*RSQSITRRNRQNSREH 229
           N Y    E  + +S  RR R  SREH
Sbjct: 287 NSYRKYRETSKERSRDRRERGRSREH 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,057
Number of Sequences: 438
Number of extensions: 2858
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)