Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D08
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    66   2e-12
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   0.88 
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   2.7  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    25   3.5  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   6.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    24   6.2  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    24   6.2  

>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 65.7 bits (153), Expect = 2e-12
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = -2

Query: 226 LDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEPIDGXNDWVDACE 47
           LD  F C FCNHEKS    +D+      + C++C +  Q     L+ PID  +DW+DAC+
Sbjct: 19  LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACD 78

Query: 46  S 44
           +
Sbjct: 79  A 79


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -2

Query: 208 CPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEPIDG 74
           CPFC  EK    +M R  +     C +   +  T   V A    G
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFVETPTAAEVKAAETSG 258


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 208 CPFCNHEKSCEVKMDRARNTARIQCRVC 125
           CPFCN + S    +    N     C VC
Sbjct: 138 CPFCNKKFSSLDVLSLVTNEGTFACNVC 165


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 136 CRVCLEDFQTTTNVLAEPID 77
           C+V  ++F   ++V+AEP+D
Sbjct: 273 CKVLRKEFPNKSDVIAEPVD 292


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 208 CPFCNHEKSCEVKMDRARNTARIQCRVCL 122
           CP CN+  +   +    R   R+ CR C+
Sbjct: 281 CPECNNSFTLTRRRRHCRLCGRVICRFCV 309


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 261  GSHHQNERLPRHWISNLT 208
            G  HQN +   HW+S  T
Sbjct: 1144 GPDHQNTKEAEHWLSEFT 1161


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 157 RNTARIQCRVCLEDFQTTTNVLAEP 83
           R T  ++C +CLE F     V+A P
Sbjct: 314 RATFGVECVICLESFTKGDKVVALP 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,932
Number of Sequences: 5004
Number of extensions: 21528
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)