Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D08
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1374 + 26117560-26117672,26117761-26117831,26118389-261184...    77   4e-15
02_01_0272 - 1816791-1816902,1817002-1817023,1817771-1817841,181...    75   2e-14
06_01_0406 + 2899807-2900133                                           62   1e-10
08_02_1386 + 26646156-26646407,26646506-26646612,26646921-266470...    27   5.9  
02_02_0593 + 11964580-11964831,11964930-11965036,11965345-119654...    27   5.9  
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124...    26   7.7  
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735...    26   7.7  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    26   7.7  

>07_03_1374 +
           26117560-26117672,26117761-26117831,26118389-26118410,
           26118510-26118573
          Length = 89

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 30/65 (46%), Positives = 39/65 (60%)
 Frame = -2

Query: 232 EALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEPIDGXNDWVDA 53
           + LD  F+CPFCNH  S E ++D         CR+C E+F TT N L EPID  ++W+D 
Sbjct: 17  DKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDE 76

Query: 52  CESAN 38
           CE  N
Sbjct: 77  CERVN 81


>02_01_0272 -
           1816791-1816902,1817002-1817023,1817771-1817841,
           1817951-1818063
          Length = 105

 Score = 74.9 bits (176), Expect = 2e-14
 Identities = 30/65 (46%), Positives = 38/65 (58%)
 Frame = -2

Query: 232 EALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEPIDGXNDWVDA 53
           + LD  F CPFCNH  S E ++D         CR+CLE F T+ N L EPID  ++W+D 
Sbjct: 17  DKLDTVFCCPFCNHGSSVECRIDLKNLIGEASCRICLETFSTSVNALTEPIDIYSEWIDE 76

Query: 52  CESAN 38
           CE  N
Sbjct: 77  CERVN 81


>06_01_0406 + 2899807-2900133
          Length = 108

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 26/66 (39%), Positives = 36/66 (54%)
 Frame = -2

Query: 238 ATEALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEPIDGXNDWV 59
           A   L+  F+CPFC+H  + E  +D     A   C VC   + TT + L EPID  ++W+
Sbjct: 18  AAPKLETAFSCPFCDHGGAVECSIDIKHMIAEASCFVCQARYSTTAHALTEPIDVYSEWI 77

Query: 58  DACESA 41
           D CE A
Sbjct: 78  DQCELA 83


>08_02_1386 +
           26646156-26646407,26646506-26646612,26646921-26647053,
           26647162-26647356,26647906-26648259
          Length = 346

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 124 LEDFQTTTNVLAEPIDGXNDWVDACESAN*IR 29
           LED   T + L   +D   DWV  CE+ N +R
Sbjct: 76  LEDAGATLSTLVARLDS-KDWVMTCEALNNVR 106


>02_02_0593 +
           11964580-11964831,11964930-11965036,11965345-11965477,
           11965586-11965780,11966330-11966683
          Length = 346

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 124 LEDFQTTTNVLAEPIDGXNDWVDACESAN*IR 29
           LED   T + L   +D   DWV  CE+ N +R
Sbjct: 76  LEDAGATLSTLVARLDS-KDWVMTCEALNNVR 106


>09_02_0565 +
           10710770-10711003,10711368-10711527,10712277-10712477,
           10712564-10712628,10712740-10712767,10712847-10712923,
           10713023-10713109,10713572-10713622,10713857-10713937,
           10714125-10714346,10714424-10714517,10714608-10714748,
           10716383-10716444,10716519-10717106
          Length = 696

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -2

Query: 196 NHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEP 83
           NH KS   K           C +CLE F     V+A P
Sbjct: 586 NHAKSARSKPAPNNTEEEKACTICLETFLAGEQVVATP 623


>02_04_0656 -
           24769069-24770814,24771552-24771608,24773307-24773582,
           24773675-24773965
          Length = 789

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -2

Query: 190 EKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEPIDGXNDWVDACESAN 38
           EK   V  D ARN  R++C V +        V A  + G    V   E  N
Sbjct: 264 EKGLAVTDDAARNVCRVECDVAIVGSGCGGGVAAAVLAGAGHKVVVIEKGN 314


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 199 CNHEKSCEVKMDRARNTARIQCR 131
           C  E +CE K  R RN  R  CR
Sbjct: 406 CYQELTCERKCQRLRNCGRHACR 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,737,003
Number of Sequences: 37544
Number of extensions: 124414
Number of successful extensions: 377
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)