Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D08
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-10|CAA22454.1|   84|Caenorhabditis elegans Hypothetical...   108   1e-24
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    29   1.3  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    26   9.1  

>AL034488-10|CAA22454.1|   84|Caenorhabditis elegans Hypothetical
           protein Y54G11A.11 protein.
          Length = 84

 Score =  108 bits (260), Expect = 1e-24
 Identities = 46/67 (68%), Positives = 50/67 (74%)
 Frame = -2

Query: 238 ATEALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLAEPIDGXNDWV 59
           A   LD QFNCPFCNHE+ CEVKMDR +N   I CRVC EDFQT  N L+EPID  +DWV
Sbjct: 16  AVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWV 75

Query: 58  DACESAN 38
           DACE AN
Sbjct: 76  DACEQAN 82


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 29  SYLIRTFTSIHPVIXSIYWLSQNIC 103
           ++L++T  +  P+I SI WLS N C
Sbjct: 216 TFLMKTEMARFPIISSISWLSPNFC 240


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/66 (21%), Positives = 29/66 (43%)
 Frame = +2

Query: 32  YLIRTFTSIHPVIXSIYWLSQNICCCLEIF*TNSTLYSRSIPCAIHFYFAGFFMIAKRTV 211
           Y    F+  H  I   +++  + C  L  F T    Y     C+++F    FF +   ++
Sbjct: 3   YFYSLFSLDHLFISRYWFVVCSYCSLLFYFFTVDFPYFFLTKCSLNFRITKFFCVVFGSL 62

Query: 212 KLLIQC 229
            ++++C
Sbjct: 63  NIILRC 68


>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
           protein T01E8.3 protein.
          Length = 1299

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 294 QQQVWDVENQKGSHHQNERLPRHWISN 214
           +  +WD  N+K +H  +  L  +WI++
Sbjct: 288 ENSLWDPTNEKVTHDMSRPLSHYWIAS 314


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
           protein ZC123.3 protein.
          Length = 1623

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -2

Query: 208 CPFCN----HEKSCEVKMDRARNTARIQCRVCLED 116
           CP CN    ++++ E+ M    N   ++C  C E+
Sbjct: 104 CPKCNWHYKYQETLEIHMKEKHNDVDVKCMFCAEN 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,987,788
Number of Sequences: 27780
Number of extensions: 122360
Number of successful extensions: 346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)