Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D06
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    31   0.25 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   5.4  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   9.4  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.4  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = -2

Query: 452  GKPKNIDDANEAMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDL 285
            G    ID++    +KR + +Y +++ + +     LE ++++ + EISD  +++  L
Sbjct: 837  GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -2

Query: 392 YYDRM-YVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQ 216
           YY ++ Y C  + W++  ++ + +Y  SD    +     +F K T+  V+ Y   F +  
Sbjct: 541 YYKKLKYACTPKSWNISDDLGQVEYIFSDKTGTLTQNVMEFKKCTINGVA-YGEAFTEAM 599

Query: 215 KKAAEFNFRNQLKVVKKKE 159
              A+   ++  ++  +K+
Sbjct: 600 AGMAKREGKDTEELTLQKQ 618


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
            Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -2

Query: 437  IDDANEAMLKRI--IQEYYDRMYVCEGQKWDLEHEVRKRDY---EISDLNSQVNDLRGKF 273
            I +A  AML     +   Y   Y+   ++W++  + ++R+    +  D  SQV D   KF
Sbjct: 863  IQNAGSAMLPSFSNLPNLYSSSYL---EEWNVFAQYKRRESNATDFEDFRSQVGDDESKF 919

Query: 272  VKPT 261
             +PT
Sbjct: 920  DEPT 923


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -1

Query: 381 HVCV*GPEVGF-GT*SQEKRL*DLRPELPSQRPQRQIRQAHT---KEGFQIRKQIRQAPE 214
           H+   G E GF  +     ++  L+  + + R  +   + HT   KE  QIRK IRQ   
Sbjct: 10  HLTCSGVERGFTNSPKTHPKMSSLKSFIKAVRASKTTAEEHTTILKESAQIRKNIRQGSN 69

Query: 213 EGR 205
           + R
Sbjct: 70  DMR 72


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -2

Query: 434 DDANEAMLKRIIQEYYDRMYVCEGQKWDLEHEVRKRDYEISDLNSQVNDLRGKFVKPTLK 255
           DD +E MLK  +   YDRM      K   E EV  +      +  ++N  +G   +   +
Sbjct: 113 DDISEEMLKSALNHLYDRMTEALRFKLPEEDEVFDKHEPAPLVRIELNCGQGGDKQAATE 172

Query: 254 KVSKYENKF 228
           +++    KF
Sbjct: 173 RLNHANKKF 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,198
Number of Sequences: 5004
Number of extensions: 36427
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)