Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D03
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   0.78 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   1.0  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   3.1  

>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 256 NDPFQRLFYSNDEK*LKKRQTYP-SVSFTPA 167
           +DPFQRLF +       K +++P SV+++P+
Sbjct: 82  HDPFQRLFKAKGNASFSKTKSFPSSVTYSPS 112


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
 Frame = -2

Query: 352 GLSSITRTCGRARAQ-PGGAGLASASKKDLTTQN--DPFQRLFYSNDEK*LKKRQTYPSV 182
           GL++     GR     P    L      DL T+   +P+ R+F S  E  L  R     +
Sbjct: 406 GLNAGLSALGREPVDIPRNTALLGVMVDDLITKGVKEPY-RVFTSRSEYRLTTRADNADL 464

Query: 181 SFTPAPFSTSLFGLKTLFDVFQKTHFLGSIST-ITKDAI 68
             TP   S  L   +T ++ FQ+T  L   S  I K+ I
Sbjct: 465 RLTPLAQSIGLLDDQTHWESFQRTKSLLDFSNKIAKEFI 503


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +2

Query: 29  IRITVKSIYTMLXNRIFSNCRDRTQKMCFLENI 127
           ++++V  + +++   IF NC+++ ++ C  E I
Sbjct: 409 LQVSVSEMGSLVVQTIFENCKEKDKRTCLDEII 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,492
Number of Sequences: 5004
Number of extensions: 30703
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)