Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D03
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0411 - 18739279-18739902,18741471-18741671                       29   2.3  
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228...    28   3.1  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     28   3.1  
09_06_0211 + 21601321-21601807,21601982-21602265,21603337-21603666     28   4.1  
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495...    27   7.2  
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621...    27   7.2  
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722...    27   9.5  

>02_03_0411 - 18739279-18739902,18741471-18741671
          Length = 274

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 355 KGLSSITRTCGRARAQPGGAGLASAS 278
           +  SS +R C RAR + GG G A+A+
Sbjct: 99  RSASSSSRRCSRARGRGGGGGAAAAA 124


>10_08_0824 +
           20821724-20822137,20822457-20822543,20822729-20822829,
           20822917-20822967,20823616-20823790,20823878-20824192,
           20824504-20824707,20824799-20825314,20825400-20825609,
           20826092-20826280,20827254-20827405,20827685-20827837,
           20827925-20828006,20828086-20828475
          Length = 1012

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 326 WASKGSARRGGISERLQKRPNNSKRP 249
           WA+  SA  GG + R ++RP  S RP
Sbjct: 25  WAASSSAGGGGAASRRRRRPGLSCRP 50


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 197 NLSVSLFHSGPFLYVSVRFENFI*CFPKNTFFGF 96
           NL++ LF SG   Y  +RF +    FPK T F +
Sbjct: 205 NLNIVLFFSGNPPYRWLRFSSITIDFPKRTIFAY 238


>09_06_0211 + 21601321-21601807,21601982-21602265,21603337-21603666
          Length = 366

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 81  VIVEIEPKKCVFWKTSNKVFKPNRDVE 161
           +I E++  KC  W+ + K F P+RD E
Sbjct: 147 IIPEVDLYKCEPWELAEKSFLPSRDPE 173


>09_04_0361 -
           16948740-16948860,16948951-16949018,16949424-16949510,
           16949626-16949694,16949786-16949854,16949944-16950765
          Length = 411

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 281 GAR*SRPSWLSPCSPTCPGDTGKAFA 358
           GA  SR +WLS    +C  DT  AFA
Sbjct: 212 GAAMSRSNWLSRWMSSCSDDTKTAFA 237


>04_04_1032 -
           30259180-30260519,30260650-30260720,30261099-30262118,
           30263886-30264121
          Length = 888

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 380 MNERLLVAQRPFQYHQDMWASKGSARRGGISERLQKRPNNSKRPFSAT 237
           MN     +  PF     +     ++ R  +S R QK+P+NSK+  S++
Sbjct: 761 MNPPFSRSSTPFNQQFRLSKRSNTSFRSPLSHRSQKKPSNSKKGSSSS 808


>06_03_1362 +
           29571324-29571564,29571746-29571921,29571972-29572251,
           29572949-29573085,29573174-29573401
          Length = 353

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 172 PAPFSTSLFGLKTLFDVFQK 113
           PAP+   +F  KTL+D ++K
Sbjct: 226 PAPYGWDVFNQKTLYDAYKK 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,808
Number of Sequences: 37544
Number of extensions: 178764
Number of successful extensions: 402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)