Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D02
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    97   9e-22
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   0.48 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   2.6  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   3.4  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   3.4  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   4.5  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   5.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.9  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    25   5.9  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 97.1 bits (231), Expect = 9e-22
 Identities = 37/64 (57%), Positives = 46/64 (71%)
 Frame = -3

Query: 260 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 81
           RFPN NQT+HC+QSY+D+ RC K +GE + PC  F   Y+SLCP EWV++WD QR  GTF
Sbjct: 20  RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79

Query: 80  AGRI 69
              I
Sbjct: 80  PAPI 83


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 232  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 74
            T++ V  TST      A NT+ +  S      S P++ ST   TS P   S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405



 Score = 27.5 bits (58), Expect = 0.84
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 232  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 74
            T++ V  TST      A NT+    S      S P++ ST   TS P   S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169



 Score = 27.5 bits (58), Expect = 0.84
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 232  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 74
            T++ V  TST      A NT+    S      S P++ ST   TS P   S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813



 Score = 25.4 bits (53), Expect = 3.4
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -1

Query: 232  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 74
            T++ V  TST        NT+    S      S P++ ST   TS P   S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229



 Score = 25.4 bits (53), Expect = 3.4
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -1

Query: 232  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 74
            T++ V  TST        NT+    S      S P++ ST   TS P   S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 299 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 144
           ++ ++ +++  DP  P +  + +C  +Y +    +K+RG +KY+P +    +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
 Frame = -3

Query: 398 LILVCKAIVWLPFSIEINPRNG*IIISNMPEMIKS--------PADLKTAPFDPRFP 252
           L L    + W P+      R G I++  + +M +S          D  T PFD  FP
Sbjct: 254 LFLATTHLFWHPYGSYERLRQGAILVKEVNKMAQSHPSWPVFIAGDFNTEPFDTNFP 310


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = -1

Query: 274 HLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNT-NHATISRECTGLSAPMSG--STSGT 104
           H ST  + T     T T  T T T  R  A  NT N +T +    G SA  S    T   
Sbjct: 141 HSSTTANRTTSTPTTTTART-TRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199

Query: 103 TSAPKAPSPV 74
           T A    SPV
Sbjct: 200 TGASHRSSPV 209


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 189 NFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSWI 347
           N+     +H+ L+A  RLI    P V R   E+     +L ++A  ++   W+
Sbjct: 40  NYKGAWVIHIVLIAALRLIFHAIPSVSR---ELAWTLTNLTYMAGSFIMFHWV 89


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 104 CPTCRPTHWGRETCTL 151
           CPT  PT W   +CT+
Sbjct: 3   CPTHGPTTWNPHSCTV 18


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = -1

Query: 301 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMS 122
           S+ P ++   +S+  S +     T +  + +S+ +   ++  ++ +TIS   +  S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352

Query: 121 GSTSGTTSAPKAPS 80
            S S TTS+ K+ S
Sbjct: 353 SSFSSTTSSSKSSS 366


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 8   HSTLIKTNRNKLKHRERLGSKSYRRR 85
           H  L++    KLK  E+L  KS RR+
Sbjct: 151 HRVLLQAEGKKLKDNEQLLKKSIRRK 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,043
Number of Sequences: 5004
Number of extensions: 33587
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)