Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_D01
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   6.9  

>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
 Frame = -2

Query: 315 QNVREIIVTTMQEQLMGRK------YRSDQAPRWTEEIANRVRQRVQDLDMKRYKILVQC 154
           Q  R   V  M ++++G K      Y  D+A   +++I+  +R+R++ L + RYK ++Q 
Sbjct: 17  QKFRPKAVAGMIQEILGEKLGALTIYNVDEAELVSKDISASIRERLKGLQLPRYKYVIQT 76

Query: 153 IMIEMKGAGVKCAQRCMWDPETDDYV 76
           ++ E  G G   A +C+WD + D Y+
Sbjct: 77  MIAEQCGNGATTAVQCVWDEDCDGYL 102


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
           protein C47D12.1b protein.
          Length = 4061

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 114 VRISPRRLSFLS*YIVPKFCTFSYPSPELFVELC*RFPLSIAALDP 251
           +++ P  L FL+     + C       ELFVELC   P+ +++L P
Sbjct: 808 LQLLPNLLQFLNKLTNLQSCQHRIQMRELFVELCLTVPVRLSSLLP 853


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
           protein C47D12.1a protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 114 VRISPRRLSFLS*YIVPKFCTFSYPSPELFVELC*RFPLSIAALDP 251
           +++ P  L FL+     + C       ELFVELC   P+ +++L P
Sbjct: 808 LQLLPNLLQFLNKLTNLQSCQHRIQMRELFVELCLTVPVRLSSLLP 853


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 114 VRISPRRLSFLS*YIVPKFCTFSYPSPELFVELC*RFPLSIAALDP 251
           +++ P  L FL+     + C       ELFVELC   P+ +++L P
Sbjct: 808 LQLLPNLLQFLNKLTNLQSCQHRIQMRELFVELCLTVPVRLSSLLP 853


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,027
Number of Sequences: 27780
Number of extensions: 290651
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)