Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C23
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   113   1e-25
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   113   1e-25
Z68006-7|CAA91995.2|  783|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AF497831-1|AAM18109.1|  783|Caenorhabditis elegans putative Na-H...    28   8.8  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  113 bits (273), Expect = 1e-25
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
 Frame = -3

Query: 664 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 485
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 484 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 314
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 313 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 143
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 142 ITPWFNMI-RRHRLKLWWDNLHRIKELAEPEKIQK 41
            TPW  +  +    + WW      +E  E   I K
Sbjct: 200 FTPWLKLFSQTETFEKWWTINKNTEESIEDTNIYK 234


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  113 bits (273), Expect = 1e-25
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
 Frame = -3

Query: 664 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 485
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 484 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 314
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 313 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 143
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 142 ITPWFNMI-RRHRLKLWWDNLHRIKELAEPEKIQK 41
            TPW  +  +    + WW      +E  E   I K
Sbjct: 200 FTPWLKLFSQTETFEKWWTINKNTEESIEDTNIYK 234


>Z68006-7|CAA91995.2|  783|Caenorhabditis elegans Hypothetical
           protein K09C8.1 protein.
          Length = 783

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 14  VFTLFXINKFLYFLRFGE-LF-DAVQVV 91
           VF    +NK LYF+ FGE LF DAV +V
Sbjct: 254 VFQEVGVNKMLYFMVFGESLFNDAVTIV 281


>AF497831-1|AAM18109.1|  783|Caenorhabditis elegans putative Na-H
           exchanger isoform 7 protein.
          Length = 783

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 14  VFTLFXINKFLYFLRFGE-LF-DAVQVV 91
           VF    +NK LYF+ FGE LF DAV +V
Sbjct: 254 VFQEVGVNKMLYFMVFGESLFNDAVTIV 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,860,175
Number of Sequences: 27780
Number of extensions: 416761
Number of successful extensions: 1147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)