Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C22
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   4.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   6.0  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   7.9  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 227  DVRHPLYGMAYIVSLVGLHLTHH 159
            D++  + G+  +  L+G HLTHH
Sbjct: 1154 DIKIKIGGLGVMAELMGKHLTHH 1176


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 855 SVVTLIPKIAVNXTSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMEN 682
           S +   P +A++ +S +    AST A +   SRS  PT      T  +   A TT EN
Sbjct: 315 SFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPT-----DTTNSISFANTTPEN 367


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 729 QLPVPSASPILKTVPMGQP 785
           +LPVPS +PIL T P+  P
Sbjct: 56  KLPVPSTNPILTTEPIVGP 74


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 137 FYKTKKNNDALNAVLLMKRYRPFRTMDA*RLNKT 238
           FY+ +K  D + +  ++ RY  +R     R NKT
Sbjct: 496 FYQLEKEPDTVPSTFILHRYYTYRIFVEDRANKT 529


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 232 QNRLKWTDTIETNNNKINISNA 297
           QN+L W  T + +N  +NI NA
Sbjct: 384 QNQLLWPSTFDDDNFTLNIMNA 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,654
Number of Sequences: 5004
Number of extensions: 64319
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)