Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C22
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0158 - 26362259-26362695,26363732-26363903                       30   2.1  
07_03_0907 - 22490158-22490555,22490647-22491250                       29   4.7  
08_02_0053 + 11721658-11721689,11721960-11722710                       29   6.3  

>02_05_0158 - 26362259-26362695,26363732-26363903
          Length = 202

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 834 KIAVNXTSVSRALPASTVAPSEPFSRSE-TPTALVTAKTPKTFPDARTTMENWI*RRSAR 658
           K+AV  ++ +   P  T + S P + +  TP++     TP + PDA TT      + +  
Sbjct: 117 KLAVTVSAAAATTPTPTASSSPPSTATPATPSSDPGMDTPSSTPDATTTPTTTTTKSTGS 176

Query: 657 VSSSPGS 637
              + GS
Sbjct: 177 TGGASGS 183


>07_03_0907 - 22490158-22490555,22490647-22491250
          Length = 333

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 840 IPKIAVNXTSVSRALPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMENWI*RRSA 661
           +P +AV   +V+  +    V   E  +    P  +   +  KT P+A    EN+   RSA
Sbjct: 95  VPVVAVPAPAVTMPMEVPVVPVPEAMAPEPIPVEVTVPEVVKTAPEAEEAEENFTISRSA 154


>08_02_0053 + 11721658-11721689,11721960-11722710
          Length = 260

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 203 MAYIVSLVGLHL---THHCFFLFCKRKSPIFRYPFENTRCMMRA 81
           MAY VSL  LH     HH FFL  K        P E++R   R+
Sbjct: 16  MAYPVSLSSLHHHPNNHHAFFLPSKTNHDNTHKPIESSRISRRS 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,356,037
Number of Sequences: 37544
Number of extensions: 407378
Number of successful extensions: 1231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)