Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C22
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    30   1.8  
U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protei...    29   3.2  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    29   4.2  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    28   7.4  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    28   7.4  

>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = -2

Query: 831 IAVNXTSVSRALPASTVAPSEPFSRSETPTALVTAKTP 718
           IA N TSVS + P S V  +   S   TPT L   KTP
Sbjct: 512 IATN-TSVSSSTPRSVVRTTSTSSVPTTPTGLAAPKTP 548


>U40937-1|AAA81693.1|  396|Caenorhabditis elegans Collagen protein
           164 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 289 SNALWFPLISNRPHETVCHKNYKE 360
           SN LW  L++N  H  V  + YKE
Sbjct: 56  SNVLWKELVTNESHRRVARQTYKE 79


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 838 PEDCRKXYICLEGVAREYGCPIGTVFKIGDADGTGNCEDPE 716
           P DC K   C+ G++  + CP G  F    AD T  C+ P+
Sbjct: 575 PSDCLKFIRCVNGISYNFECPNGLSF---HAD-TMMCDRPD 611


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 718 EDVPGCEDYYGELDLKAIRKSELLAGLQADGQ-PRPNQPKQLKPRPPK 578
           ED+PG  DY     +KA+   E +  L A  +   P  P    P PP+
Sbjct: 167 EDIPGWADYEENFKIKAV--GEYVEALAAKRRSTEPATPASASPTPPE 212


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 798 LPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMEN 682
           + ++   P+ P +   TPT   T K+  T P   TTM++
Sbjct: 269 MKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKS 307



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 798 LPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMEN 682
           + ++   P+ P +   TPT   T K+  T P   TTM++
Sbjct: 383 MKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKS 421



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 798 LPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMEN 682
           + ++   P+ P +   TPT   T  T K+ P   TTM++
Sbjct: 256 MKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKS 294



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 798 LPASTVAPSEPFSRSETPTALVTAKTPKTFPDARTTMEN 682
           + ++   P+ P +   TPT   T  T K+ P   TTM++
Sbjct: 370 MKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKS 408


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 718 EDVPGCEDYYGELDLKAIRKSELLAGLQADGQ-PRPNQPKQLKPRPPK 578
           ED+PG  DY     +KA+   E +  L A  +   P  P    P PP+
Sbjct: 167 EDIPGWADYEENFKIKAV--GEYVEALAAKRRSTEPATPASASPTPPE 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,712,350
Number of Sequences: 27780
Number of extensions: 366704
Number of successful extensions: 1224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)