Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C19
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 98 1e-21
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 91 2e-19
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 29 0.93
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 28 1.6
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 27 2.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 3.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.8
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 26 6.6
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 8.7
>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
Uch1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 98.3 bits (234), Expect = 1e-21
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 6/211 (2%)
Frame = -1
Query: 670 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 491
PLE+ P+VL +LQK+GV + ++ D+ L+ E ++PRPV +++ +FP S +K
Sbjct: 4 PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61
Query: 490 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 314
+ IL K S + + Q I NACGTI L+H+V+N ++++ ++ + A+
Sbjct: 62 SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115
Query: 313 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 149
G R KL+E S+ + H A S ED + HFI FV + D YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175
Query: 148 LDGRKAFPVNHGPTSQETLLEDAAKICKEFM 56
LDGR+ PV H + L + + K ++
Sbjct: 176 LDGRQEGPVQHSEIESDLLNAEVLSVIKNYI 206
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 90.6 bits (215), Expect = 2e-19
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 6/219 (2%)
Frame = -1
Query: 667 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 488
+ES+ V ++ LGV + + ++ LD ++L P + ++ LF + + T
Sbjct: 6 IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63
Query: 487 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 308
+ + + NIF+ KQ I+NAC T AL+ + N++D I+L + +F + +K L
Sbjct: 64 MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGTT-LSEFKDFSKTL 115
Query: 307 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELD 143
+G+ L SE I H A+ + + ED V +HFI++ + YELD
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELD 174
Query: 142 GRKAFPVNHGPTSQETLLEDAAKICKEFMAR-DPNEVRF 29
G +A P+NHG ++E E A + + +A DP E+RF
Sbjct: 175 GLQAAPINHGSCTKEEFAEKAVSVIQARIANYDPAEIRF 213
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 28.7 bits (61), Expect = 0.93
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = -1
Query: 274 SEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQET 95
S ++ ELA + TNT V ++++V + + L K F H P+S E
Sbjct: 126 SRALLEQFAELASK--TNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEA 183
Query: 94 LL 89
L+
Sbjct: 184 LI 185
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 584 SHDIYNIPFVWYAELLQKLVQDIGIGFKRD*SFGRHFSHSNCGVDEGD 727
+H + F W E L + + DIG+ D S+G H S D GD
Sbjct: 133 AHSKIDKEFGWLLEDLDQEIDDIGVPGTEDPSYG-HSEDSEVSDDTGD 179
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 168 KMEHCMS*MAVKLFLSIMAQLHRKLCWKMQQKFAKN 61
+M HC S L I L R L W+ +QK A N
Sbjct: 508 RMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMN 543
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -1
Query: 265 IINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNH-GPTSQETLL 89
+I+ + E A+E + + + E + H IS ++ ++ D P PT+ E ++
Sbjct: 1205 VISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGDATLVLPPQDLAPTTIERIV 1264
Query: 88 EDAAKICKEFMARDPNEVRF 29
+ AAKI + P ++F
Sbjct: 1265 DAAAKIGEALNITGPYNIQF 1284
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 211 AEDPVNHHFISFVQKDGALYELDGR 137
AE+ V HF+ KD LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -1
Query: 262 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 170
++A + L ++ +++T + E+PV+HH S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = -1
Query: 697 TEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSWV 557
++ +E +PLES PD L K + K+G W I V V PE W+
Sbjct: 318 SQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECWL 372
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -1
Query: 376 NNTDIIELSDGHMQ-KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDP 200
+NT+++ + ++ K ++ K +D + G L + E +H + GQ +DP
Sbjct: 31 SNTNMLSTEENIVKAKAVSRKKPVDVSYAG--LARHE----SHVDTDYHGQALNTDNQDP 84
Query: 199 VNHHFISFVQKDGALYE 149
N+ SFV K+ LYE
Sbjct: 85 KNYQARSFV-KENELYE 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,031
Number of Sequences: 5004
Number of extensions: 67051
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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