Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C16
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 30 0.12
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 27 0.84
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 1.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 1.5
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 1.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 1.9
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 2.6
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 4.5
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 25 5.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.9
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 5.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 5.9
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 24 7.8
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 24 7.8
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 30.3 bits (65), Expect = 0.12
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 16 NSQSLTFVQVIHSTPQSALXTSSLQGRKQHSSTTPGSLRD 135
+SQS + ++S+P+S L TSS++ R+ HS+ + + D
Sbjct: 380 SSQSSSKTARLNSSPKSTLKTSSVKTRRSHSAQSSRKVSD 419
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 27.5 bits (58), Expect = 0.84
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 201 VLRSGETRRCAVRALLAGDILAISQGT--RRSGRMLFPPLQTRGAQSGL 61
V+R G+ ++ GDIL + +GT GR++ P + + QS +
Sbjct: 180 VIREGQVHELEANEVVPGDILKLDEGTIICADGRVVTPDVHLQVDQSAI 228
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 263 EEQEVARTYCGRHLANILAYVCFG 192
EE + R Y G L N L CFG
Sbjct: 413 EENRIVRQYMGHKLGNFLIGSCFG 436
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 1.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 187 STPKHT*ASIFAKCRPQYVRATSCSSLEYVKLITTTNMNITAV 315
STP + A C P V+ + S EY +L++ MN T++
Sbjct: 1333 STPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSL 1375
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 258 AGGSAHVLRPTLGEYTRLRVLRSGETRRCAVRALLAGDILAISQGT 121
AG L+ T+ + VLR G + ++ GDIL + +GT
Sbjct: 251 AGSIVDELKKTMA--LKASVLRDGRVKEIEASEIVPGDILHLDEGT 294
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -3
Query: 302 FILVVVISLTYSSEEQEVARTYCGRHLANILAYVCFGVEKRGGAQYA 162
F+L ++ Y + +A++Y R L+ + C+GVE + ++Y+
Sbjct: 1304 FVLELIGEFYYGRGHKFLAKSYITRALSCLKNIGCYGVENKLRSRYS 1350
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 398 FGRPIHSNPIRWTDKDFLVKRLQSTMMKTAVMFI 297
F R IH+ + W + + ++R + KT V F+
Sbjct: 121 FARHIHNRRLCWAEFIYCIRRGIKAIFKTTVQFL 154
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 4.5
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 182 VSPLRSTRKRVY-SPSVGRSTCALPPAPRLNTSN*SRLL 295
V P R+T Y S S+G ST L AP N +RLL
Sbjct: 305 VPPSRATLTGGYASGSIGLSTPGLSRAPHYELDNGNRLL 343
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 201 VLRSGETRRCAVRALLAGDILAISQGTR 118
V+RSG+T L+ GD++ + G R
Sbjct: 122 VIRSGKTEHIVASKLVPGDLVILQIGDR 149
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 5.9
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 PLLFKTVSXSLLFKSSIPHRSPLXAPLVCKGGNNIRPLRRVPCEIASMS--PASKARTAH 175
P F T + SSIP+ S G I+ +S S PAS T
Sbjct: 699 PSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTT 758
Query: 176 RRVSPLRSTRKRVYSPSVGRST 241
VS +S+ ++PS ST
Sbjct: 759 SSVSSRQSSSSSSFTPSSAIST 780
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 158 KARTAHRRVSPLRSTRKRVYSP--SVGRSTCALP 253
K RT V PLR + R+Y+P S+G + A+P
Sbjct: 7 KRRTYENAVKPLR--KSRIYAPFRSIGHVSNAVP 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 58 PQSALXTSSLQGRKQHSSTTPGSLR 132
P+S+L +S+ G SST P S R
Sbjct: 981 PESSLSSSTTSGLTSSSSTIPSSTR 1005
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 152 ASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPP 256
+ K +AH + S +S RV+S + ST + PP
Sbjct: 339 SEKGYSAHTQNSSAQSPHPRVFSANSAFSTTSPPP 373
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 321 DEDCSNVHISSRDQFDVFK 265
DED SN ISSR DVFK
Sbjct: 310 DEDTSNARISSR-ILDVFK 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,958
Number of Sequences: 5004
Number of extensions: 31390
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -