Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C16
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 31 0.26
02_05_0363 - 28297295-28298167 29 1.1
08_01_0465 + 4099721-4100556,4101505-4103614 29 1.8
01_05_0759 + 24963621-24963902,24963955-24964719 29 1.8
06_02_0189 - 12816751-12817088,12817272-12817330,12817745-128177... 28 2.4
01_06_0353 - 28647452-28647477,28647568-28649134 28 2.4
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 28 3.2
07_03_0513 - 18981334-18981413,18982255-18982510,18982778-18982834 27 4.3
09_04_0252 + 16098848-16099142,16099258-16099375,16100474-161005... 27 5.6
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662... 27 5.6
07_01_1154 - 10850206-10850318,10850528-10850658,10850998-108511... 27 7.5
03_06_0251 + 32654223-32654423,32655275-32655589 27 7.5
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 27 7.5
05_01_0094 - 627259-628236,628609-628689 26 9.9
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 26 9.9
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 31.5 bits (68), Expect = 0.26
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 38 FKSSIPHRSPLXAPLVCKGGNNIRPLRRVPCEIASMSPASKARTAHRRV 184
++S+IP SP + C+G + R R E + SP + R A RR+
Sbjct: 133 WRSTIPRPSPRQSAAFCRGTSEWRMASRSRSECSQSSPTIQRRHAWRRI 181
>02_05_0363 - 28297295-28298167
Length = 290
Score = 29.5 bits (63), Expect = 1.1
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 110 PLRRVPCEIASMS--PASKARTAHRRVSPLRSTRKR-VYSPSVGRSTCALPPAPRLNTSN 280
P+RR PC S P+ A V P R R + P G +C L P+P N S+
Sbjct: 212 PMRRTPCRRRQTSTMPSGFAVCLSPLVRPSPGRRHRHAHPPDPGTFSCELRPSPLHNLSS 271
>08_01_0465 + 4099721-4100556,4101505-4103614
Length = 981
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 327 HHDEDCSNVHISSRDQFDVFKRGAGGSAHVLRPTLGEYTRLRVLRS 190
HHDE+ ++ S +D D++ + ++ LG LRVLR+
Sbjct: 697 HHDENADDMCFSEKDAGDMYSDEKNAARQFVK-DLGRLRELRVLRT 741
>01_05_0759 + 24963621-24963902,24963955-24964719
Length = 348
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 134 IASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
+A ++ A T H R+R + PS + C LPPAP
Sbjct: 217 LAKLADDPNAVTGHLLEQAAERKRRRQHLPSHEPTVCPLPPAP 259
>06_02_0189 -
12816751-12817088,12817272-12817330,12817745-12817773,
12817808-12818013,12818245-12818329
Length = 238
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -3
Query: 395 GRPIHSNPIRWTDKDFLVKRLQSTMMKTAVMFILVVVIS 279
GR HSN + DKD+ V++L S + V IL V IS
Sbjct: 22 GRAAHSNDLWNDDKDWDVQKLNSLFEQEVVHKILQVHIS 60
>01_06_0353 - 28647452-28647477,28647568-28649134
Length = 530
Score = 28.3 bits (60), Expect = 2.4
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +2
Query: 23 SXSLLFKSSIPHRSPLXAPLVCKGGNNIR-PLRRVPCEIASMSPASKARTAHRRVSP--L 193
S SLLF PH S P GG ++R PLR P S A+ T HRR + +
Sbjct: 8 SLSLLFAH--PHSSN---PRPFAGGPHLRRPLRAAPHRARCASDAATTATRHRRPAEENI 62
Query: 194 RSTRKRVYSPSVGRSTCALPPAP 262
R R+ P S +P P
Sbjct: 63 REEAARLRGPGNDFSAWYVPFPP 85
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -3
Query: 158 YWQETYLRSRKEPGVVD 108
+W+ET R+RKEPGVVD
Sbjct: 403 HWRET--RARKEPGVVD 417
>07_03_0513 - 18981334-18981413,18982255-18982510,18982778-18982834
Length = 130
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 188 EKRGGAQYAPYWQETYLRSRKEPGVVDE 105
EK G YW+E Y++ K G +DE
Sbjct: 19 EKDGSGCNFWYWEEAYIKFLKRSGFIDE 46
>09_04_0252 +
16098848-16099142,16099258-16099375,16100474-16100552,
16101005-16101250
Length = 245
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 137 ASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRS-TCALPPA 259
AS SP+S + T SP+ + +P+V RS T PPA
Sbjct: 28 ASFSPSSSSSTMAASPSPISAAAAAADAPAVTRSITILRPPA 69
>02_03_0343 +
17961977-17962596,17962670-17963015,17965933-17966291,
17966384-17966636
Length = 525
Score = 27.1 bits (57), Expect = 5.6
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = -3
Query: 398 FGRPIHSNPIRWTDKDFLVKRLQSTMMKTAVMFILVVVISLTYSSEEQEVAR--TYCGRH 225
F +P+H R + V RL+ + AV V+S ++EE A + GR
Sbjct: 49 FRKPLHRTLARLAARHGAVFRLRLGSRRVAV------VVSSAPAAEECLGAHDVAFAGRP 102
Query: 224 LANILAYVCFGVEKRGGAQYAPYWQ 150
+ +G G A Y PYW+
Sbjct: 103 RLPSAGILSYGWSTMGTAAYGPYWR 127
>07_01_1154 -
10850206-10850318,10850528-10850658,10850998-10851110,
10851221-10851307,10852873-10853000,10853132-10853210,
10853262-10853354,10854211-10854295,10855000-10855085,
10855183-10855375,10856891-10856970
Length = 395
Score = 26.6 bits (56), Expect = 7.5
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +2
Query: 164 RTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAPRLNTSN*SRLLI*TLLQSSSWCFVIVL 343
R RRVS ++R+++ +V +TC L P +T S LQ SW ++ +
Sbjct: 239 RVLARRVSLKNQLKRRLHAINVASATCFLFPFAMWDTILGSASDSIVKLQFPSWAYLSTV 298
Query: 344 RESPYQSNVLDSNVSAGRIHL 406
+D NV+ ++HL
Sbjct: 299 LFGMVLIFYVD-NVAEEKLHL 318
>03_06_0251 + 32654223-32654423,32655275-32655589
Length = 171
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 38 FKSSIPHRSPLXAPLVCKGGNNIRPLRRVPCEIASMSPASKARTAHRRV 184
F +S PHR V GN R L+++P + + S A A+RRV
Sbjct: 42 FPASDPHRYAC-VQRVFGAGNTARMLQQLPVQERGRAADSMAAEAYRRV 89
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 182 VSPLRSTRKRVYSPSVGRSTCALPPAPRLNTSN*SR 289
+SP R+R S + S CA PP P S SR
Sbjct: 10 LSPCGLARRRSASSAASISCCAAPPPPSAKGSQESR 45
>05_01_0094 - 627259-628236,628609-628689
Length = 352
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 137 ASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAPRL 268
A PAS A +A + ST + + STCA P AP L
Sbjct: 158 AKPKPASAAGSASAATTTAGSTPAGSTTTTTTSSTCATPNAPAL 201
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = -2
Query: 186 ETRRCAVRALLAGDILAISQGTRRSGRMLFPPLQTRGAQSGLRCGMDD 43
E R AV A LA A+S +G PP RGA + CG D
Sbjct: 75 EAREAAVPARLAEAEAALSAAVAEAGSAEPPPADVRGALRWM-CGRMD 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,842
Number of Sequences: 37544
Number of extensions: 231857
Number of successful extensions: 768
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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