Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C16
(406 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82082-7|CAE53735.1| 76|Caenorhabditis elegans Hypothetical pr... 30 0.55
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 0.55
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 30 0.55
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 30 0.55
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 30 0.55
AF016417-1|AAK68335.1| 241|Caenorhabditis elegans Hypothetical ... 29 1.7
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 28 2.9
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 28 2.9
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 28 2.9
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 28 2.9
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 28 2.9
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 28 2.9
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 28 2.9
AF016446-9|AAC24169.2| 340|Caenorhabditis elegans Hypothetical ... 28 2.9
U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical pr... 27 3.9
U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z49886-4|CAA90053.1| 137|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z82082-5|CAE53733.1| 72|Caenorhabditis elegans Hypothetical pr... 26 9.0
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 26 9.0
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr... 26 9.0
>Z82082-7|CAE53735.1| 76|Caenorhabditis elegans Hypothetical
protein ZC334.10 protein.
Length = 76
Score = 30.3 bits (65), Expect = 0.55
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 305 MFILVVVISLTYSSEEQEVARTYCGRHLANILAYVCFG 192
+F++ ++ISL+ ++ + R CGRHL N L +C G
Sbjct: 6 VFLIFLLISLSVATADFGAQRR-CGRHLVNFLEGLCGG 42
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.3 bits (65), Expect = 0.55
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +2
Query: 116 RRVPCEIASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAPRLNTS 277
RR P + S +P + A RR SP S K +P +S PPAPR S
Sbjct: 391 RRSPSKSRSPAPKREIPPARRRRSP--SASKSPPAPKRAKSRSKSPPAPRRRRS 442
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = +2
Query: 110 PLRRVPCEIASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAPR 265
P RR S SPA K R R SP R+R SPS +S PPAP+
Sbjct: 316 PARRRRSPSQSKSPAPK-RAKSRSKSPPAPARRR-RSPSASKSP---PPAPK 362
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 30.3 bits (65), Expect = 0.55
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 128 CEIASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAPR 265
C +S +S + V R RKR SPS ST A PP P+
Sbjct: 230 CSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 30.3 bits (65), Expect = 0.55
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 128 CEIASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAPR 265
C +S +S + V R RKR SPS ST A PP P+
Sbjct: 230 CSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 30.3 bits (65), Expect = 0.55
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 128 CEIASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAPR 265
C +S +S + V R RKR SPS ST A PP P+
Sbjct: 230 CSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
>AF016417-1|AAK68335.1| 241|Caenorhabditis elegans Hypothetical
protein F17A9.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 110 PLRRVPCEIASMSPASKARTAHRRVSPLRSTRKRVYSPSVGRST 241
PL+ +P A +PAS T + +PL + SPS+ RST
Sbjct: 189 PLQSLPLLTAQTAPASSVITTSQMYAPLPLKIPKTPSPSLLRST 232
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 138 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 177
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 138 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 177
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 138 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 177
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 138 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 177
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 15 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 54
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 138 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 177
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 138 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 177
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 143 MSPASKARTAHRRVSPLRSTRKRVYSPSVGRSTCALPPAP 262
MSP + R H P+ R +P++ + A+PP P
Sbjct: 138 MSPRTPPRGIHHSGEPVHQKTPRKSAPNMSVDSIAMPPPP 177
>AF016446-9|AAC24169.2| 340|Caenorhabditis elegans Hypothetical
protein C02E7.10 protein.
Length = 340
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 127 LRDRKYVSCQ*GAYC-APPRFSTPKHT*ASIFA--KCRP-QYVRATSCSSLEYVKLITTT 294
+R Y + A+C A PR T S+F RP Y+R SC + YV +I T
Sbjct: 38 IRQESYSQLKPCAHCGAAPRAQTTNLPSESVFVWPAQRPTNYIRQDSCQFIGYVLVIAVT 97
Query: 295 NMNI 306
++
Sbjct: 98 TSSL 101
>U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical
protein ZK418.9b protein.
Length = 510
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/49 (20%), Positives = 27/49 (55%)
Frame = +2
Query: 80 LVCKGGNNIRPLRRVPCEIASMSPASKARTAHRRVSPLRSTRKRVYSPS 226
++ KGG NI+ + R ++PA++ + +V ++ ++ +++ S
Sbjct: 299 VIGKGGENIKQIERETGATCGLAPAAEQKNEDEKVFEIKGSQLQIHHAS 347
>U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical
protein ZK418.9a protein.
Length = 557
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/49 (20%), Positives = 27/49 (55%)
Frame = +2
Query: 80 LVCKGGNNIRPLRRVPCEIASMSPASKARTAHRRVSPLRSTRKRVYSPS 226
++ KGG NI+ + R ++PA++ + +V ++ ++ +++ S
Sbjct: 346 VIGKGGENIKQIERETGATCGLAPAAEQKNEDEKVFEIKGSQLQIHHAS 394
>Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical
protein F36H1.1 protein.
Length = 139
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = -3
Query: 320 MKTAVMFILVVVISLTYSSEEQEVARTYCG 231
MKTAV+ L+ ++++ Y+++EQ++ + G
Sbjct: 1 MKTAVIVGLLCLLAIAYAADEQKIDKLQIG 30
>Z49886-4|CAA90053.1| 137|Caenorhabditis elegans Hypothetical
protein C06A1.5 protein.
Length = 137
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 327 HHDEDCSNVHISSRDQFDVFKRGAG--GSAHVLRPTLGEYTRLRVL 196
+ DED NV + F++F +G S HV P + +Y R RVL
Sbjct: 34 NEDEDDDNVD----ENFELFDQGKAVPTSEHVTTPFMTKYERARVL 75
>Z82082-5|CAE53733.1| 72|Caenorhabditis elegans Hypothetical
protein ZC334.8 protein.
Length = 72
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 299 ILVVVISLTYSSEEQEVARTYCGRHLANILAYVCFG 192
I+++ L SE + A+ CGR+L L +C G
Sbjct: 5 IIILFFLLLQLSEAKPEAQRRCGRYLIRFLGELCNG 40
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
protein ZK1193.2 protein.
Length = 1250
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 218 NILAYVCFGVEKRGGAQYAPYWQETYLRSRKEPGVV-DECCF 96
N L +GVE + GA+YA ++ + + + + D C F
Sbjct: 453 NRLVIFTYGVENKNGAEYAHFYYDNFTMLQAQSLTYRDNCMF 494
>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
protein C28G1.4 protein.
Length = 1081
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 189 GETRRCAVRALLAGDILAISQGTRRSGRMLFPPLQ 85
G +R C+ R+L + GTRRS R + P L+
Sbjct: 247 GHSRPCSSRSLASTSSDQTETGTRRSNRTVKPSLK 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,294
Number of Sequences: 27780
Number of extensions: 185292
Number of successful extensions: 632
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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