Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C15
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.36 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
 Frame = -1

Query: 710 GKQFLSAAYDRYIKLWDTESGACVSRFTSRKVPYCAKFHPDADKQHLFVAGTSDKKIICW 531
           G + LSAA  R+I+      G  +S+  +R V  C  F     K +L    +S   ++  
Sbjct: 685 GSEALSAATVRFIEAEPQPIGKALSKCHNRNVTTCNMFR----KTNLSGDSSSGTTLLLE 740

Query: 530 --DVRSGEIVQEYDRHLG--AVNTITFVDENRRFVTTSDDKSLRV 408
             D+ S EI+ +   HLG  A N    V+   + V T  D  + +
Sbjct: 741 LDDIASMEILYKPGDHLGVFACNRSELVEAILKRVQTPFDPDVPI 785


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 643  HAPDSVSHSFMYRSYAADRNC 705
            H  +++ HSFMY  +A    C
Sbjct: 1731 HPNNTLLHSFMYHEHAMTEGC 1751


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 643  HAPDSVSHSFMYRSYAADRNC 705
            H  +++ HSFMY  +A    C
Sbjct: 1727 HPNNTLLHSFMYHEHAMTEGC 1747


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +1

Query: 280 TMTLLSMDWHASHLPLGAAV--TAGRECIV-GSAMYFMSTGMS 399
           T   L+M     HLP+GA+V       CIV GS M   S G S
Sbjct: 188 TQASLAMTREEKHLPIGASVLFEIFPFCIVFGSDMIVRSIGNS 230


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 595 WNLAQYGTFRDVNRDTH 645
           WN++ YG  RD+    H
Sbjct: 87  WNVSDYGGVRDLRIPPH 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,433
Number of Sequences: 438
Number of extensions: 4966
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)