Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C11
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    27   4.1  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    27   4.1  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   4.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   4.1  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   9.4  

>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 747 KDSPESLLMKNTKSPNQPVHH 685
           K  P  LL+ + KSPN+  HH
Sbjct: 122 KKDPAKLLVSHNKSPNRNYHH 142


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 171 YSHHFMYYIYKVVIVN-HLYVLQ 106
           + HH +YYIY  +++N + Y +Q
Sbjct: 378 FEHHDVYYIYNAIVLNDYAYWIQ 400


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 246 MLINTMFFFKTQTMYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQXITNL 91
           ML  T+     + +   +++Y  FF +    YY+ K V  + LY+L  I +L
Sbjct: 694 MLSRTLELISPEELQRLIYYYFEFFTTTGGEYYLKKEV-QHSLYILSLIVSL 744


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 644 DTGDWVGETVEEAPWWTGWFGL 709
           D   +V  T E APW   WFG+
Sbjct: 695 DPSKFVDRTPENAPWKPYWFGI 716


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 620 SLQITLQNDTGDWVGETVEEAPWWTGWF-GLFVFFIKRLSGESL 748
           SL +  ++ T  W  +  + +P+W  WF GL   F++   G  L
Sbjct: 230 SLLVQQEDGTFVWRTDLYKTSPYWMDWFKGLSDKFLRAPYGRML 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,688
Number of Sequences: 5004
Number of extensions: 61584
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)