Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C11
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    28   6.7  
AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    28   8.9  
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    28   8.9  

>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 207 MYNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVL 109
           +Y+   + K+  Y  H +Y IY + I+N LY++
Sbjct: 46  IYHIYTYTKSPIYHIHHIYQIYHIHIINTLYII 78


>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16c protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 590 VGWISSRCRSSLQITLQNDTGDWVGETVEEAPWWTGWFGLFVFFIKRLS 736
           +G +      S +  L  +T   + E  +E PW+T W      F+  LS
Sbjct: 397 IGRVGQWMGRSYKDNLSKETRKMLAEGTDERPWFTYWITTIQIFVCLLS 445


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 590 VGWISSRCRSSLQITLQNDTGDWVGETVEEAPWWTGWFGLFVFFIKRLS 736
           +G +      S +  L  +T   + E  +E PW+T W      F+  LS
Sbjct: 142 IGRVGQWMGRSYKDNLSKETRKMLAEGTDERPWFTYWITTIQIFVCLLS 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,320
Number of Sequences: 27780
Number of extensions: 352924
Number of successful extensions: 904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)