Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C08
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   6.7  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   8.8  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
 Frame = +3

Query: 33  FFHTCFTSMQAIQXAVSILLLFDFTYCXYNHFFFKLNYTTYRTAHFYFN------MIYFY 194
           FF     ++Q++  A+  L+ F      +  F+F  N T+Y + + Y N      +++ Y
Sbjct: 588 FFRFLLLTVQSLVFAIEKLVNFFSMANFFLAFYFVCNATSYSSLNPYGNWARPLFLVFEY 647

Query: 195 TKLSER*R*IFNYKLLAI--KFVNSKTFFFTIEILIKIYLVFFFITIFNIFMADQH 356
             +      IF+  +LA+  +  + +   F    L  I +++F   +F I +   H
Sbjct: 648 ILICL----IFSQFMLAMGNRPRSCRVLLFISTALFSIIMIYFVFCVFYISLIPLH 699


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 353 TLSMC*VSFEHFFFSIGRNGTKFL 424
           T+S C +S EHFFF    NG  ++
Sbjct: 43  TISACAISKEHFFFG-SHNGAIYI 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,943
Number of Sequences: 5004
Number of extensions: 52114
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)