Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_pT_C08
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine rec...    31   0.67 
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    30   2.0  
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    28   6.2  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein200 protein.
          Length = 343

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +3

Query: 66  IQXAVSILLLFDFTYCXYNHFFFKLNYTTYRTAH-FYFNMIYFYTKLSER*R*IFNYKLL 242
           I  A  ++L  D+TY    HF   + Y T+ T    +F     +  +S+    +    + 
Sbjct: 182 IYNAPVLVLAIDYTY----HFIAAVTYITFFTLQVIFFAGFLAWNSISQ----LMKNTMS 233

Query: 243 AIKFVNSKTFFFTIEILIKIYLVFFFITIFNIFMADQH*VCVRFLLNIFF 392
              F   + FF T+ I + + LVFFF   F + ++       + +LNI F
Sbjct: 234 RRTFNLQRKFFITLLIQLIVPLVFFFFPSFYVLVSVIIKYYNQAILNILF 283


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
            protein Y46G5A.6 protein.
          Length = 1002

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 84   ILLLFDFTYCXYNHFFFKLNYTTYRTAHFYFNMIYF 191
            ILL  +F +   N  FFK +   +R  HFYF  I+F
Sbjct: 932  ILLFLNFFFHFENMHFFKFSLQIWR--HFYFQPIFF 965


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 249 KFVNSKTFFFTIEILIKIYLVFFFITIFNIFMADQ 353
           K ++  T  FTI +   + LV FF ++F I++AD+
Sbjct: 244 KKIHQTTDTFTILVSDGLGLVLFFASLFGIYLADR 278


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +3

Query: 27  TSFFHTCFTSMQAIQXAVSILLLFDFTYCXYNHFFFKLNYTTYRTAHFYFNMIYFYTKLS 206
           TSF+HT F            LL+   T C  N   +K+N   YR     +N  Y    L+
Sbjct: 161 TSFYHTVF------------LLVLSATSCLGNMLNYKINQKYYRACQQSYNGKYC---LA 205

Query: 207 ER*R*IFN--YKLLAIKFVNSKTFFFTIEILIKIYLVFFFITIF 332
           ER +   N  +    I+F +S  FFFTI   + + +  F I  F
Sbjct: 206 ERYQISDNIHFYFFFIRFASS-IFFFTILCPVLMLVASFEIDWF 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,848,821
Number of Sequences: 27780
Number of extensions: 283630
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)