Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C06
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 123 7e-29
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 119 1e-27
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 119 1e-27
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 93 1e-19
04_02_0008 + 8473198-8475523,8475618-8475967 28 3.4
02_02_0511 + 11072699-11073146,11076148-11076365 28 4.5
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 27 5.9
01_06_0355 + 28657833-28660665,28660762-28661126 27 5.9
08_01_0917 + 9033451-9036136,9036373-9036722 27 7.8
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 123 bits (297), Expect = 7e-29
Identities = 58/91 (63%), Positives = 71/91 (78%)
Frame = -3
Query: 398 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 219
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 218 IGYGSNKKTRHMLPNGFRKXLVHNVKELERL 126
IGYGS+KKTRH LPN F+K +VHNV ELE L
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELL 408
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 119 bits (286), Expect = 1e-27
Identities = 57/87 (65%), Positives = 68/87 (78%)
Frame = -3
Query: 386 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 207
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 206 SNKKTRHMLPNGFRKXLVHNVKELERL 126
S+KKTRH LPN F+K +VHNV ELE L
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELL 86
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/31 (67%), Positives = 22/31 (70%)
Frame = -1
Query: 127 LMMQNRKYCAESAHGGXSKKRKLSVERAQQL 35
LMM NR YCAE AH +KKRK VERA QL
Sbjct: 86 LMMHNRTYCAEIAHNVSTKKRKEIVERAAQL 116
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 119 bits (286), Expect = 1e-27
Identities = 57/87 (65%), Positives = 68/87 (78%)
Frame = -3
Query: 386 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 207
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 206 SNKKTRHMLPNGFRKXLVHNVKELERL 126
S+KKTRH LPN F+K +VHNV ELE L
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELL 86
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/42 (64%), Positives = 28/42 (66%)
Frame = -1
Query: 127 LMMQNRKYCAESAHGGXSKKRKLSVERAQQLSXRVTNAAARL 2
LMM NR YCAE AH +KKRK VERA QL VTN ARL
Sbjct: 86 LMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARL 127
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 93.1 bits (221), Expect = 1e-19
Identities = 40/55 (72%), Positives = 48/55 (87%)
Frame = -3
Query: 290 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKXLVHNVKELERL 126
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE L
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELL 153
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/42 (64%), Positives = 28/42 (66%)
Frame = -1
Query: 127 LMMQNRKYCAESAHGGXSKKRKLSVERAQQLSXRVTNAAARL 2
LMM NR YCAE AH +KKRK VERA QL VTN ARL
Sbjct: 153 LMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARL 194
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -3
Query: 386 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 294
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>04_02_0008 + 8473198-8475523,8475618-8475967
Length = 891
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 95 LCAVLPVLHHQVFPAL*HCXLGPYGIHLGAYDGSS 199
+ + L LH+Q+ P L HC L P I L YD +S
Sbjct: 709 IASALDYLHNQLVPPLIHCDLKPSNILLD-YDMTS 742
>02_02_0511 + 11072699-11073146,11076148-11076365
Length = 221
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 9 AAAFVTLXLSCWALSTLSFRFFEXPPXALSAQYFLF 116
AA FV + SC + F +F PP AQY+ +
Sbjct: 148 AAGFVNIDSSCCPGPCMPFPYFNQPPCDNRAQYWFW 183
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 101 AVLPVLHHQVFPAL*HCXLGPYGIHLG 181
A L LH+ PA+ HC L P I LG
Sbjct: 858 AALDYLHNNCQPAIVHCDLKPSNILLG 884
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 74 RXATMXALCAVLPVLHHQVFPAL*HCXLGPYGIHLGAYDGSSC 202
R + M + LHH+ F + HC L P + L A D ++C
Sbjct: 872 RVSIMLDAALAMAYLHHEHFEVVLHCDLKPSNVLLDA-DMTAC 913
>08_01_0917 + 9033451-9036136,9036373-9036722
Length = 1011
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 23 HSXAELLGSFHAQLPLLRXATMXA-LCAVLPVLHHQVFPAL*HCXLGPYGIHL 178
H+ + + + +L L++ + + L LHH + P + HC + P I L
Sbjct: 803 HASTAAISTSYRRLNLMKRLHIALDVAEALEYLHHHIVPPIVHCDIKPSNILL 855
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,954,859
Number of Sequences: 37544
Number of extensions: 225680
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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