Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_pT_C02
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0130 - 11622139-11623325,11626144-11627116 40 0.002
06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469... 32 0.42
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 31 0.74
06_01_0220 - 1673657-1675765 30 1.7
03_06_0105 + 31675083-31675313,31676171-31676815 29 2.3
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 29 3.9
04_03_1025 + 21803807-21805249 29 3.9
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 29 3.9
01_05_0403 - 21817691-21817747,21818070-21818171,21818184-218182... 29 3.9
03_03_0193 - 15312568-15312753,15312811-15312933,15313112-153131... 28 5.2
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671... 28 5.2
02_02_0381 + 9573651-9574174,9574271-9574583 28 5.2
05_04_0423 - 21126038-21126556 28 6.9
04_01_0039 + 455760-457631 28 6.9
03_06_0574 + 34825075-34825362,34825635-34825683,34825847-348260... 28 6.9
03_05_0677 + 26663880-26664581 28 6.9
02_01_0703 + 5251901-5251950,5252783-5253554 28 6.9
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +2
Query: 149 RSMCYYGGASADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGDDCWARDHIHAGLVR 328
R++ Y GG + D G + GC C G++ V+ D C G C R I GL
Sbjct: 147 RTLAYIGGDNVDADVGSLTTGCVATCRLQAGNLTVTDDDVGACSGIGC-CRTSIPVGLQY 205
Query: 329 NRSWSDD 349
W DD
Sbjct: 206 YYVWFDD 212
>06_03_0472 +
21145523-21145892,21146098-21146141,21146916-21146974,
21147090-21147162,21147281-21147342,21147424-21147499,
21147618-21147692,21148699-21148782,21148947-21149015,
21149614-21149673,21150211-21150288,21150468-21150556,
21150868-21150964,21151084-21151137,21151643-21151738,
21151930-21152118,21152200-21152277,21152511-21152555,
21152728-21152820,21152907-21152987
Length = 623
Score = 31.9 bits (69), Expect = 0.42
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 170 GASADIHAGLMRHGCWG--YCSDHGGSIGVSY-DGSSDCVGDDCWARDHIHAGLVRNRSW 340
G SA + G + G + S ++G + GSSDCVGDD WA + + RN
Sbjct: 277 GISATLCGGKTKEGVFVGVLLSMSSTAVGAQFVGGSSDCVGDDHWAEPVLKFLMERNSIN 336
Query: 341 SDDGSTVSQVTQGT 382
+ G QVT GT
Sbjct: 337 ALHG----QVTVGT 346
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 153 ERSHHTRTESSLLMPIMLDSSIPPPWYTPAPWFTVG 46
+++ R E + M + SS+ PP + PAPW +G
Sbjct: 63 QQTRFYRCEKMIKMRVTQQSSVCPPTFLPAPWSPLG 98
>06_01_0220 - 1673657-1675765
Length = 702
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 170 GASADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGD 286
G +A I+ L R G D GG +G+ YDGS D
Sbjct: 317 GEAAQIYCELARLGAAMRVIDVGGGLGIDYDGSHSAQTD 355
>03_06_0105 + 31675083-31675313,31676171-31676815
Length = 291
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Frame = -3
Query: 193 RVDVRTSPAVVAHGAV-----APYAHGIITPYAH--HAGLFHSAPLVHS 68
R+D+ SP G V PY G +TP AH H+G + P+ +S
Sbjct: 203 RMDMSLSPITYYDGMVHVHPYTPYTFGCVTPLAHLTHSGYGYGGPIDYS 251
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = +2
Query: 245 IGVSYDGSSDCVGDDCWARDHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 424
I + G C+G + G + N ++S +G T S G PV+ + S W
Sbjct: 716 IAIMAKGKLRCIGTSIRLKSKFGTGYIANVNFSGNGHTQSPNINGNTEVPVNPNIESVKW 775
>04_03_1025 + 21803807-21805249
Length = 480
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 412 GHGHGHWLKKRSLGHLAYSAPII 344
GHGHGH L++R L +A +A ++
Sbjct: 8 GHGHGHELRRRRLLPVASAAAVL 30
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 398 SMTVTSKYWCSVGGVCEDWCGNSVAIDGGA 487
S T++ + W +GG+ E G SV I G A
Sbjct: 78 SKTISGRVWTEIGGLDEAAAGRSVLIRGAA 107
>01_05_0403 -
21817691-21817747,21818070-21818171,21818184-21818272,
21818612-21818714,21819938-21820223,21820577-21820725,
21821500-21821612,21821764-21821922,21822272-21822341
Length = 375
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 184 VRTSPAVVAHGAVAPYAHGII-TPYAHHAGLFHSAPL 77
++ PA+V G + Y G+ + YAHHAG H+ L
Sbjct: 28 IQRRPALVNGGGGSSYKDGVRGSSYAHHAGGLHTGVL 64
>03_03_0193 -
15312568-15312753,15312811-15312933,15313112-15313134,
15313196-15313349,15314443-15314754
Length = 265
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 413 WSRSWTLAEKTFPGSLGLQCSHHRSSCGF 327
W+ A K + LG + SHH S+CGF
Sbjct: 122 WTTPEAKATKDWRKQLGEKLSHHLSTCGF 150
>02_05_0371 +
28364896-28366182,28366510-28366623,28366861-28367125,
28367981-28368105
Length = 596
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 152 SMCYYGGASADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVG 283
S CY A+A H+ RHG G S+ V +S G
Sbjct: 35 SFCYAAAATATAHSSSFRHGISGAALSANSSVPVPLYNASAAAG 78
>02_02_0381 + 9573651-9574174,9574271-9574583
Length = 278
Score = 28.3 bits (60), Expect = 5.2
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Frame = +2
Query: 119 SDDSVRVWCDRSMCYYGGASADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCV---GDD 289
+D++ VW +YGGA A +G M C GY + G S + G
Sbjct: 43 TDETPPVWLKAHATFYGGADA---SGTMGGAC-GYVDLYSQGYGTRNAALSTALFNDGAS 98
Query: 290 CWARDHIHAGLVRNRSWSDDGSTVSQVTQGTFFQP-VSMTVTSKYWCS 430
C I R W G TV+ VT F P ++ + WC+
Sbjct: 99 CGQCYKIACDRKRAPQWCKPGVTVT-VTATNFCPPNWNLPSDNGGWCN 145
>05_04_0423 - 21126038-21126556
Length = 172
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 16 YKVCSSGSFFTNREPGGWS-VPRGRNGRVQHDGH 114
YK+ S SF + + GGW + RG NG G+
Sbjct: 129 YKMNSDASFDVSTKTGGWGFLARGSNGEFLEGGY 162
>04_01_0039 + 455760-457631
Length = 623
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 176 SADIHAGLMR-HGCWGYCS-DHGGSIGVSYDGS 268
+A I+ L++ HG G + D GG +GV YDG+
Sbjct: 276 AAGIYCALVKEHGATGMTTLDCGGGLGVDYDGT 308
>03_06_0574 +
34825075-34825362,34825635-34825683,34825847-34826021,
34826118-34826188,34826764-34827491
Length = 436
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 119 SDDSVRVWCDRS-MCYYGGASADIHAGLMRH 208
S + +R C ++ +CY GG+S+ IHA RH
Sbjct: 388 SCEQLRTDCGQTPICYDGGSSSAIHAQAARH 418
>03_05_0677 + 26663880-26664581
Length = 233
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 412 GHGHGHWLKKRSLGHLAYSAPIIAPAAVSHQSRV 311
G+GHGH +GH A+ P P Q+ +
Sbjct: 180 GYGHGHGFHGGHMGHAAHGVPRQGPLEQPQQADI 213
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 153 ERSHHTRTESSLLMPIMLDSSIPPP 79
++ H E L P+++DSS+PPP
Sbjct: 91 DKCHFAHGERELGKPMLMDSSMPPP 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,030
Number of Sequences: 37544
Number of extensions: 314254
Number of successful extensions: 1182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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